Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   ACNHKQ_RS08745 Genome accession   NZ_CP182139
Coordinates   1820529..1822250 (+) Length   573 a.a.
NCBI ID   WP_375156537.1    Uniprot ID   -
Organism   Escherichia coli strain CUWW06     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1815529..1827250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNHKQ_RS08720 (ACNHKQ_08720) ycaL 1815945..1816709 (+) 765 WP_001295345.1 metallopeptidase YcaL -
  ACNHKQ_RS08725 (ACNHKQ_08725) cmk 1816882..1817565 (+) 684 WP_000125016.1 (d)CMP kinase -
  ACNHKQ_RS08730 (ACNHKQ_08730) rpsA 1817676..1819349 (+) 1674 WP_000140327.1 30S ribosomal protein S1 -
  ACNHKQ_RS08735 (ACNHKQ_08735) ihfB 1819509..1819793 (+) 285 WP_000167336.1 integration host factor subunit beta -
  ACNHKQ_RS08740 (ACNHKQ_08740) - 1820000..1820614 (+) 615 WP_375156536.1 hypothetical protein -
  ACNHKQ_RS08745 (ACNHKQ_08745) rec2 1820529..1822250 (+) 1722 WP_375156537.1 ComEC family protein Machinery gene
  ACNHKQ_RS08750 (ACNHKQ_08750) msbA 1822287..1824035 (+) 1749 WP_000551270.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACNHKQ_RS08755 (ACNHKQ_08755) lpxK 1824032..1825018 (+) 987 WP_000570541.1 tetraacyldisaccharide 4'-kinase -
  ACNHKQ_RS08760 (ACNHKQ_08760) ycaQ 1825055..1826287 (+) 1233 WP_416522323.1 crosslink repair DNA glycosylase YcaQ -
  ACNHKQ_RS08765 (ACNHKQ_08765) ycaR 1826339..1826521 (+) 183 WP_000350058.1 protein YcaR -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 65011.07 Da        Isoelectric Point: 8.5654

>NTDB_id=979507 ACNHKQ_RS08745 WP_375156537.1 1820529..1822250(+) (rec2) [Escherichia coli strain CUWW06]
MHSIWRHYKQRCNPICLGLGMGERLSVPKEIKNIMRDTGTAHLMAISGLHIAFAALLAAGLIRSGQIFLPGRWIHWQMPL
IGGICCAAFYAWLTGMQPPALRTVVALATWGMLKLSGRQWSGWDVWICCLAAILLMDPVAILSQSLWLSAAAVAALIFWY
QWFPCPEWQLPPVLRAVVSLIHLQLGITLLLMPVQIVIFHGISLTSFIANLLAIPLVTFITVPLILAAMVVHLSGPLILE
QGLWFLADRSLALLFWGLKSLPEGWINIAERWQWLSFSPWFLLVVWRLNAWRTLPAMCVAVGLLMCWPLWQKPRPDEWQV
YMLDVGQGLAMVIARNGKAILYDTGLAWPEGDSGQQLIIPWLHWHNLEPEGVILSHEHLDHRGGLDSILHTWPMLWIRSP
LNWEHHQPCVRGEAWQWQGLRFSAHWPLQGSNDKGNNHSCVVKVDDGTNSILLTGDIEAPAEQKMLSRYWQQVQATLLQV
PHHGSNTSSSLPLIQRVNGKVAFASASRYNAWRLPSNKVKHRYQQQGYTWLDTPHQGQVTVDFSAQGWRISSLREQILPR
WYHQWFGVPVDNG

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=979507 ACNHKQ_RS08745 WP_375156537.1 1820529..1822250(+) (rec2) [Escherichia coli strain CUWW06]
GTGCACAGTATCTGGCGTCACTACAAACAACGCTGCAACCCTATATGTCTTGGTTTAGGTATGGGGGAACGGTTATCCGT
CCCTAAAGAAATCAAAAATATCATGCGTGATACTGGAACGGCGCATTTAATGGCGATATCGGGATTGCACATCGCTTTTG
CGGCGTTGCTGGCTGCCGGACTCATTCGCAGTGGACAAATTTTTCTGCCTGGGCGCTGGATCCACTGGCAAATGCCATTA
ATTGGCGGAATCTGCTGTGCTGCTTTTTATGCCTGGCTGACGGGAATGCAACCTCCTGCATTGCGTACCGTTGTGGCGCT
TGCTACGTGGGGAATGCTTAAGTTAAGTGGGCGACAGTGGAGTGGCTGGGATGTATGGATATGTTGTCTGGCGGCAATTT
TGCTGATGGATCCTGTTGCCATTCTCTCGCAAAGTTTATGGCTCTCTGCCGCTGCGGTCGCGGCATTGATATTTTGGTAT
CAGTGGTTTCCCTGTCCTGAGTGGCAACTGCCGCCGGTATTGCGTGCAGTTGTTTCCCTCATTCATTTGCAACTGGGAAT
CACACTTCTGCTTATGCCCGTGCAAATCGTCATATTTCATGGCATTAGTCTGACCTCGTTTATTGCAAATCTATTAGCAA
TTCCCTTGGTGACATTTATCACGGTTCCGTTGATCCTCGCCGCGATGGTTGTGCATTTAAGCGGGCCGTTAATCCTGGAG
CAAGGGTTATGGTTTCTTGCCGACCGGTCTTTGGCTTTACTTTTCTGGGGGTTAAAGAGTTTGCCAGAAGGGTGGATCAA
CATTGCTGAACGTTGGCAATGGCTATCATTTTCCCCATGGTTCTTACTGGTGGTATGGCGATTAAACGCCTGGCGAACGT
TGCCAGCAATGTGTGTGGCTGTAGGCTTGCTGATGTGCTGGCCGCTGTGGCAAAAACCTCGACCTGACGAGTGGCAAGTG
TACATGCTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACGGGACTGGC
CTGGCCCGAAGGGGATAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTC
TGAGCCATGAACATCTGGATCACCGGGGAGGGCTGGATTCAATATTGCACACATGGCCGATGTTATGGATCAGAAGTCCG
TTAAACTGGGAACATCATCAGCCCTGTGTGCGTGGCGAAGCGTGGCAATGGCAAGGATTGCGTTTCAGTGCGCACTGGCC
TTTACAAGGTAGCAACGATAAAGGAAATAACCATTCCTGTGTGGTTAAGGTTGATGACGGGACGAATAGCATTCTTCTAA
CCGGTGATATTGAAGCCCCAGCTGAACAAAAGATGCTAAGCCGTTACTGGCAGCAAGTGCAGGCAACATTGCTTCAGGTA
CCTCACCATGGCAGTAATACCTCATCATCGTTGCCATTAATTCAGCGAGTGAATGGAAAAGTGGCATTCGCATCGGCATC
GCGCTATAACGCATGGCGACTGCCCTCTAACAAAGTTAAGCATCGCTATCAACAGCAAGGTTATACGTGGCTTGATACTC
CTCATCAGGGGCAAGTAACGGTCGATTTTTCAGCGCAAGGCTGGCGGATTAGCAGCCTCAGGGAGCAAATTTTACCTCGT
TGGTATCATCAGTGGTTTGGCGTGCCAGTGGATAACGGGTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(324-500)

Competence protein (Competence)

(20-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

35.008

100

0.365

Multiple sequence alignment