Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACNHKQ_RS00400 Genome accession   NZ_CP182139
Coordinates   80929..81921 (+) Length   330 a.a.
NCBI ID   WP_000224466.1    Uniprot ID   -
Organism   Escherichia coli strain CUWW06     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 75929..86921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNHKQ_RS00375 (ACNHKQ_00375) rbsD 76043..76462 (+) 420 WP_000715936.1 D-ribose pyranase -
  ACNHKQ_RS00380 (ACNHKQ_00380) rbsA 76470..77975 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  ACNHKQ_RS00385 (ACNHKQ_00385) rbsC 77980..78945 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  ACNHKQ_RS00390 (ACNHKQ_00390) rbsB 78970..79860 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACNHKQ_RS00395 (ACNHKQ_00395) rbsK 79996..80925 (+) 930 WP_032281895.1 ribokinase -
  ACNHKQ_RS00400 (ACNHKQ_00400) cytR 80929..81921 (+) 993 WP_000224466.1 ribose operon transcriptional repressor RbsR Regulator
  ACNHKQ_RS00405 (ACNHKQ_00405) mdtD 81887..83314 (-) 1428 WP_001280850.1 multidrug transporter subunit MdtD -
  ACNHKQ_RS00410 (ACNHKQ_00410) yieP 83337..84029 (-) 693 WP_001131179.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36623.96 Da        Isoelectric Point: 5.2141

>NTDB_id=979474 ACNHKQ_RS00400 WP_000224466.1 80929..81921(+) (cytR) [Escherichia coli strain CUWW06]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRIIQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=979474 ACNHKQ_RS00400 WP_000224466.1 80929..81921(+) (cytR) [Escherichia coli strain CUWW06]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACTAATCCTTTCTATTCAGAACTGGTGCGCGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAGCGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCAAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAATCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment