Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   AAC977_RS15885 Genome accession   NZ_CP151641
Coordinates   36571..37743 (-) Length   390 a.a.
NCBI ID   WP_072954841.1    Uniprot ID   A0A1M4TRY8
Organism   Vibrio gazogenes strain DSM 21264     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 31571..42743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC977_RS15870 (AAC977_15815) - 32805..33290 (-) 486 WP_131814846.1 GNAT family N-acetyltransferase -
  AAC977_RS15875 (AAC977_15820) - 33402..33722 (-) 321 WP_072954845.1 hypothetical protein -
  AAC977_RS15880 (AAC977_15825) cqsS 34442..36499 (+) 2058 WP_072954844.1 hybrid sensor histidine kinase/response regulator Regulator
  AAC977_RS15885 (AAC977_15830) cqsA 36571..37743 (-) 1173 WP_072954841.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  AAC977_RS15890 (AAC977_15835) - 38177..41251 (-) 3075 WP_072954838.1 efflux RND transporter permease subunit -
  AAC977_RS15895 (AAC977_15840) - 41254..42396 (-) 1143 WP_072954835.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 390 a.a.        Molecular weight: 43947.26 Da        Isoelectric Point: 6.1865

>NTDB_id=979439 AAC977_RS15885 WP_072954841.1 36571..37743(-) (cqsA) [Vibrio gazogenes strain DSM 21264]
MFNYPKSLPEFIESRIDFLMKDLINTDYGKNLVVGITPTLEDIVMQSNDYLDISEHIDIREQLIKSLQHKKNDMFMSSIF
LHDDNHKHILEDEISKYTGFSNSFISQSGWSANVSLLQALCVPETNVYIDFFAHMSMWEGARYSHANIHPFMHNNCNHLK
KLIQRHGPGIIVVDSVYSTIGTVAPLEDIVAIAHEYNCVSVVDESHSLGIYGQNGAGILNELGLSEKVDFMTASLAKAFA
YRAGIICTNSDFGHCIPYAAFSNIFSSTMMTHEIPALKATLDVIRNADDRREKLFALSKKLRLGLKEIGLDIRSQSHIVS
LETGDEFNTKKIRTILEEQGIFGSVFCRPATPKNKNIIRFSINSSLSFEDVDKIIIVCDSLLKDSSVYFK

Nucleotide


Download         Length: 1173 bp        

>NTDB_id=979439 AAC977_RS15885 WP_072954841.1 36571..37743(-) (cqsA) [Vibrio gazogenes strain DSM 21264]
ATGTTTAACTATCCTAAGTCTCTACCTGAATTTATTGAGTCAAGAATTGATTTTTTAATGAAAGATCTTATCAATACGGA
TTATGGGAAGAACTTAGTTGTTGGGATAACACCGACACTCGAAGATATCGTGATGCAGAGTAATGATTATTTAGATATAT
CTGAACATATAGATATTCGTGAACAATTGATCAAATCACTGCAACACAAGAAAAATGACATGTTTATGTCATCAATATTT
CTACATGATGATAATCATAAACATATCTTAGAAGATGAGATATCAAAGTACACTGGCTTTAGTAACTCATTTATCTCTCA
GTCTGGATGGAGTGCGAATGTCTCTTTATTACAAGCTCTTTGTGTACCAGAAACCAATGTCTATATTGATTTTTTTGCTC
ATATGTCGATGTGGGAAGGGGCTCGCTATAGTCATGCGAATATTCATCCATTTATGCATAATAACTGTAATCATTTGAAA
AAATTGATCCAACGCCATGGCCCCGGGATTATCGTGGTGGACTCTGTCTACAGTACCATCGGAACCGTAGCGCCTTTAGA
AGATATTGTTGCAATCGCTCATGAGTATAATTGTGTTTCAGTTGTGGATGAATCGCACTCTTTAGGGATCTACGGGCAGA
ATGGCGCAGGCATATTAAATGAGCTGGGTCTATCGGAAAAAGTTGATTTCATGACTGCAAGCTTAGCAAAAGCATTTGCC
TACCGTGCTGGTATCATTTGCACGAATAGCGATTTTGGTCACTGTATCCCATATGCTGCATTTTCGAATATTTTTAGTTC
AACGATGATGACTCATGAAATTCCAGCATTAAAAGCAACATTGGATGTAATAAGAAATGCTGATGATAGAAGAGAGAAAT
TGTTTGCTTTATCAAAAAAACTGAGATTAGGATTGAAGGAAATTGGTCTTGATATAAGAAGCCAGTCTCATATTGTTTCA
CTAGAAACGGGTGATGAATTTAATACTAAAAAAATTAGGACAATACTTGAAGAACAAGGTATTTTTGGTTCGGTTTTTTG
CCGTCCAGCAACACCTAAAAATAAAAATATTATTCGATTTTCGATTAATAGTTCGTTAAGTTTTGAAGATGTAGATAAAA
TAATAATCGTCTGCGATTCATTATTAAAAGATAGTTCTGTGTATTTTAAGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(43-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M4TRY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

54.359

100

0.544

Multiple sequence alignment