Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AAC977_RS12290 Genome accession   NZ_CP151640
Coordinates   2751173..2751691 (-) Length   172 a.a.
NCBI ID   WP_072956449.1    Uniprot ID   A0A1M4WNM9
Organism   Vibrio gazogenes strain DSM 21264     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2746173..2756691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC977_RS12265 (AAC977_12220) rimM 2746209..2746763 (-) 555 WP_072955936.1 ribosome maturation factor RimM -
  AAC977_RS12270 (AAC977_12225) rpsP 2746786..2747034 (-) 249 WP_059121562.1 30S ribosomal protein S16 -
  AAC977_RS12275 (AAC977_12230) ffh 2747212..2748579 (-) 1368 WP_072955934.1 signal recognition particle protein -
  AAC977_RS12280 (AAC977_12235) - 2748831..2749625 (+) 795 WP_072955932.1 inner membrane protein YpjD -
  AAC977_RS12285 (AAC977_12240) - 2749708..2750982 (+) 1275 WP_072955930.1 HlyC/CorC family transporter -
  AAC977_RS12290 (AAC977_12245) luxS 2751173..2751691 (-) 519 WP_072956449.1 S-ribosylhomocysteine lyase Regulator
  AAC977_RS12295 (AAC977_12250) gshA 2751841..2753442 (-) 1602 WP_072955929.1 glutamate--cysteine ligase -
  AAC977_RS12300 (AAC977_12255) - 2753536..2756379 (-) 2844 WP_072955927.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18855.63 Da        Isoelectric Point: 4.6714

>NTDB_id=979427 AAC977_RS12290 WP_072956449.1 2751173..2751691(-) (luxS) [Vibrio gazogenes strain DSM 21264]
MPLLDSFTVDHTRMNAPAVRVAKTMNTPKGDTITVFDLRFTVPNQDILSEKGIHTLEHLFAGFMRAHLNGNGVEIIDISP
MGCRTGFYMSLIGVPSEQRVADAWLAAMEDVLKVEDQNKIPELNIYQCGTAAMHSLDEAKDIAKAVISSGISVNQNDALA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=979427 AAC977_RS12290 WP_072956449.1 2751173..2751691(-) (luxS) [Vibrio gazogenes strain DSM 21264]
ATGCCATTATTAGATAGTTTTACGGTGGATCATACACGTATGAATGCCCCTGCCGTTCGTGTTGCTAAAACAATGAATAC
CCCTAAAGGCGATACGATTACAGTGTTTGATTTACGCTTTACCGTGCCGAATCAAGATATCCTTTCCGAGAAAGGTATTC
ATACATTAGAACACTTATTTGCGGGCTTTATGAGAGCTCATCTCAATGGTAACGGCGTTGAAATTATTGATATTTCCCCA
ATGGGATGCCGGACAGGCTTCTACATGAGCTTAATTGGCGTGCCTTCTGAGCAGCGAGTCGCTGATGCTTGGTTAGCCGC
AATGGAAGATGTACTGAAGGTTGAAGACCAGAACAAGATTCCGGAATTAAATATTTATCAATGCGGAACTGCAGCGATGC
ACTCTCTGGATGAGGCGAAAGATATTGCTAAAGCTGTCATTTCAAGTGGTATCAGTGTGAATCAGAATGATGCTCTGGCG
CTACCAGAATCAATGCTTCAGGAACTGAAAGTGGACTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M4WNM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.38

99.419

0.849

Multiple sequence alignment