Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AAC977_RS04855 Genome accession   NZ_CP151640
Coordinates   1051495..1052895 (+) Length   466 a.a.
NCBI ID   WP_072962825.1    Uniprot ID   A0A1M5GE40
Organism   Vibrio gazogenes strain DSM 21264     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1046495..1057895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC977_RS04835 (AAC977_04810) - 1046953..1047807 (-) 855 WP_072962831.1 LysR family transcriptional regulator -
  AAC977_RS04840 (AAC977_04815) - 1048197..1048373 (-) 177 Protein_935 integrase arm-type DNA-binding domain-containing protein -
  AAC977_RS04850 (AAC977_04825) uvrB 1049191..1051221 (+) 2031 WP_072962827.1 excinuclease ABC subunit UvrB -
  AAC977_RS04855 (AAC977_04830) luxO 1051495..1052895 (+) 1401 WP_072962825.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AAC977_RS04860 (AAC977_04835) luxU 1052898..1053248 (+) 351 WP_072962822.1 quorum-sensing phosphorelay protein LuxU -
  AAC977_RS04865 (AAC977_04840) yvcK 1053303..1054223 (-) 921 WP_072962820.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  AAC977_RS04870 (AAC977_04845) moaA 1054529..1055512 (+) 984 WP_072962817.1 GTP 3',8-cyclase MoaA -
  AAC977_RS04875 (AAC977_04850) moaB 1055684..1056190 (+) 507 WP_072962812.1 molybdenum cofactor biosynthesis protein B -
  AAC977_RS04880 (AAC977_04855) moaC 1056209..1056688 (+) 480 WP_072962811.1 cyclic pyranopterin monophosphate synthase MoaC -
  AAC977_RS04885 (AAC977_04860) moaD 1056685..1056930 (+) 246 WP_072962808.1 molybdopterin synthase sulfur carrier subunit -
  AAC977_RS04890 (AAC977_04865) moaE 1056932..1057384 (+) 453 WP_072962805.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52540.17 Da        Isoelectric Point: 5.0329

>NTDB_id=979418 AAC977_RS04855 WP_072962825.1 1051495..1052895(+) (luxO) [Vibrio gazogenes strain DSM 21264]
MQSEQLPQKSRYLLMVEDTASVAVLYRTYLEPLDIDINIVGTGKEALESLEKREPDLILLDLRLPDMTGMDVLHEVKRKY
PDVPVIFMTAHGSIDTAVEAMRYGAQDFLIKPCEADRLRVTVNNAIRKASKIKSDSDDPRSQNYQGFIGSSQTMQAVYRT
IDSAAASKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RCDDVIEIAYSLLGYMSKEEEKDFVRLAAEVVERFRQYEWPGNVRQLQNVLRNVVVLNQGKEITLSMLPPPLNQPKESYL
RLVQPMMEERKPSVHEIFPLWMTEKMAIENAIDACEGNIPKAAGYLEVSPSTIYRKLQSWNAEENA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=979418 AAC977_RS04855 WP_072962825.1 1051495..1052895(+) (luxO) [Vibrio gazogenes strain DSM 21264]
ATGCAATCTGAACAGTTACCACAAAAAAGTAGATATCTACTGATGGTTGAAGATACAGCGTCTGTTGCTGTGCTGTATCG
AACCTATCTTGAACCTCTGGATATTGACATCAATATTGTCGGTACGGGGAAAGAGGCGTTAGAGAGTCTTGAAAAAAGAG
AACCCGATCTGATTCTGCTTGATTTACGACTTCCGGATATGACAGGGATGGATGTTTTACATGAGGTGAAACGGAAATAC
CCGGATGTTCCCGTCATTTTCATGACCGCTCATGGCTCAATTGATACGGCTGTCGAAGCCATGCGTTATGGTGCTCAAGA
TTTTCTAATTAAGCCATGCGAAGCAGACCGATTACGCGTTACGGTGAATAATGCAATTCGTAAAGCTTCAAAAATTAAGA
GTGATTCCGATGATCCGCGCAGCCAAAACTATCAGGGATTCATCGGCAGTAGTCAAACCATGCAGGCCGTTTATCGAACC
ATTGACTCTGCGGCAGCGAGTAAAGCCAGTATTTTTATTACCGGAGAAAGTGGCACAGGGAAAGAAGTATGTGCAGAAGC
CATTCATGCTGCAAGTCGGCGAGGTGACAAACCTTTCATTGCGATTAACTGTGCAGCAATTCCGAAAGATTTAATTGAAA
GTGAACTGTTCGGTCACGTGAAAGGGGCTTTTACGGGAGCTGCAACTGATCGGCAGGGTGCAGCGGAGCTCGCTGATGGC
GGGACTCTATTTCTGGATGAACTCTGTGAGATGGATTTGGACTTACAGACTAAGCTGTTGCGGTTTATCCAAACCGGTAC
ATTCCAGAAAGTCGGTTCATCAAAAATGAAAAGTGTTGATGTTCGCTTTGTGTGTGCGACAAACCGTGACCCGTGGAAAG
AGGTTCAGGAAGGTCGTTTCCGGGAAGATTTGTACTATCGTCTATATGTGATCCCACTCCATCTACCGCCACTTCGGGAG
CGATGTGATGATGTTATTGAAATCGCTTATTCTTTGCTCGGTTATATGTCCAAAGAAGAAGAGAAAGACTTTGTTCGTCT
TGCCGCTGAAGTCGTGGAACGTTTCAGACAGTACGAATGGCCGGGCAATGTCCGCCAATTGCAGAATGTTTTACGTAATG
TGGTCGTGCTGAATCAGGGAAAAGAAATCACGCTGAGTATGTTACCACCGCCATTGAATCAACCGAAAGAAAGTTATCTC
CGCTTGGTTCAACCGATGATGGAAGAGAGAAAACCTTCAGTCCATGAAATATTTCCGCTCTGGATGACTGAAAAAATGGC
CATCGAAAATGCCATTGATGCCTGTGAAGGAAATATTCCGAAAGCTGCAGGTTATCTGGAAGTGAGTCCCTCAACCATTT
ACCGTAAGTTACAATCTTGGAATGCAGAAGAGAACGCATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M5GE40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.248

95.923

0.837

Multiple sequence alignment