Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ACGHT2_RS04025 Genome accession   NZ_AP031455
Coordinates   745912..748119 (+) Length   735 a.a.
NCBI ID   WP_117567358.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain k46-0107-A9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 740912..753119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHT2_RS04000 (K460107A9_07080) miaA 741251..742138 (+) 888 WP_003064153.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  ACGHT2_RS04005 (K460107A9_07090) hflX 742277..743515 (+) 1239 WP_003064155.1 GTPase HflX -
  ACGHT2_RS04010 (K460107A9_07100) - 743508..744146 (+) 639 WP_117567354.1 cystathionine beta-lyase -
  ACGHT2_RS04015 (K460107A9_07110) rnz 744186..745115 (+) 930 WP_003064159.1 ribonuclease Z -
  ACGHT2_RS04020 (K460107A9_07120) - 745112..745870 (+) 759 WP_117567356.1 SDR family oxidoreductase -
  ACGHT2_RS04025 (K460107A9_07130) recJ 745912..748119 (+) 2208 WP_117567358.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ACGHT2_RS04030 - 748193..748441 (-) 249 Protein_727 transposase -
  ACGHT2_RS04035 (K460107A9_07140) - 748608..749891 (-) 1284 WP_117567360.1 hypothetical protein -
  ACGHT2_RS04040 (K460107A9_07150) - 750160..750768 (-) 609 WP_259293829.1 CPBP family intramembrane glutamic endopeptidase -
  ACGHT2_RS04045 (K460107A9_07160) bsh 751081..752061 (+) 981 WP_117567362.1 choloylglycine hydrolase -
  ACGHT2_RS04050 (K460107A9_07170) - 752039..752584 (+) 546 WP_117567364.1 hypothetical protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 82477.12 Da        Isoelectric Point: 4.3926

>NTDB_id=97931 ACGHT2_RS04025 WP_117567358.1 745912..748119(+) (recJ) [Streptococcus pasteurianus strain k46-0107-A9]
MITSKYNWKNIEKEPDNGFFELTKKEKLTELASQILYSRGVDTAEKLIQFLSTDLSQLHDPYLLHDMDKAVNRIRQAIEN
YEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFTDGYGPNESVYKYFIEQQNVSLIITVDNGVAGHEAIAYAQ
SQGVDVIVTDHHGLPAELPEAFAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKQTERIGLIELIKVSDVDMADVNEETVGFKIAPQLNALGRLDDPNPAVELLTGFDDEEAHNIAKMINAKN
EERKEIVQKIFDEAMSMVDLEKPVQVLAKEGWHPGVLGIVAGRILEQIAQPVIVLNIEDGIAKGSARSIEAINIFHALDE
HRDLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEINLDTVHSLEKLAPFGMDNPKP
VFEIKDFVVKQARTMGQNGAHLKLKIAQGTTAIDLVAFNQGHLAQEFQQVQNLCLATTLSINKWNGQTTVQLMLEDARVE
GVQLIDIRSKTASLPERVPVLTEDSTANEVVVLDIPDKAEELKSLFVGRHFEAIYFKNHIKRAYYLTGYGTRDQFAKLYK
TIYQFPEFDVRYKLKELSQYLNIPDILLIKMIQIFDELDFVTITDGVMVVNKDAQKRSISESQIYQDLKQQVKFQELMAL
GTPQEIYDWLTDEDD

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=97931 ACGHT2_RS04025 WP_117567358.1 745912..748119(+) (recJ) [Streptococcus pasteurianus strain k46-0107-A9]
ATGATAACAAGTAAATACAATTGGAAAAATATTGAAAAAGAGCCAGATAATGGCTTTTTTGAGCTGACAAAAAAAGAAAA
ACTAACAGAATTAGCTAGTCAGATTCTTTATAGTCGAGGTGTTGATACGGCAGAAAAATTGATTCAATTTTTATCAACGG
ATTTGTCACAATTGCATGACCCTTACCTTTTACATGACATGGATAAAGCGGTTAATCGTATTCGCCAAGCTATTGAGAAT
TACGAGCAAATCTTGGTTTATGGTGATTATGATGCTGACGGAATGACTAGTGCCAGCATTATGAAAGAAGCCCTTGAAAT
GTTGGGTGCCGAAGCCCAAGTTTATCTGCCAAATCGTTTCACAGATGGTTACGGCCCAAATGAATCAGTCTATAAATATT
TCATTGAGCAGCAAAACGTTTCTTTGATTATTACGGTGGACAATGGCGTAGCAGGGCACGAAGCGATTGCCTACGCACAA
AGTCAGGGGGTAGATGTCATTGTGACAGACCACCACGGTTTGCCAGCAGAGCTACCAGAAGCATTTGCGATTGTGCACCC
AGAACACCCAGAAGCTGATTATCCGTTCAAATATCTGGCTGGCTGTGGCGTTGCTTTCAAAGTTGCTTGTGCTTTGCTAG
AATCTATTCCGACAGAAATGCTTGATCTGGTGGCAATTGGAACAATTGCTGATATGGTGAGTTTGACTGATGAAAACCGC
ATTATGGTTAAAGTTGGACTTGAAATTCTGAAACAAACCGAACGCATTGGTCTGATTGAATTGATAAAAGTATCAGATGT
GGATATGGCAGATGTCAATGAAGAAACGGTTGGTTTCAAAATTGCTCCGCAGCTAAATGCACTTGGTCGCCTAGATGACC
CAAATCCTGCTGTCGAATTATTGACTGGCTTTGATGATGAAGAAGCGCATAACATTGCCAAGATGATTAATGCTAAAAAC
GAAGAGCGCAAGGAAATTGTTCAGAAAATCTTCGATGAAGCCATGAGCATGGTTGATTTGGAAAAGCCAGTGCAAGTATT
GGCTAAAGAAGGCTGGCACCCAGGCGTTTTAGGAATTGTCGCAGGGCGTATTTTAGAACAAATCGCGCAGCCAGTGATTG
TTTTAAATATCGAAGATGGGATTGCTAAAGGTTCTGCCAGAAGTATCGAGGCCATTAATATTTTCCATGCTCTTGATGAG
CACCGTGATTTATTTGAAGCCTTTGGTGGACACGCTGGCGCTGCTGGAATGACTTTGGTGACTGAAAATCTTGATAAATT
ATCACAAGTTTTGTGTGATTATATTGCTGAAAATGATATTGACTTATCACAGAAAAAAGAGCTTGTTATTGATGAGGTTC
TGGAGCTCTCAGAGATTAACCTTGATACCGTGCACAGTCTTGAAAAATTGGCACCATTTGGCATGGACAATCCAAAACCA
GTCTTTGAAATTAAAGATTTTGTGGTGAAACAAGCACGCACTATGGGGCAAAATGGTGCGCATTTAAAATTAAAAATTGC
CCAAGGCACAACGGCAATTGACCTTGTTGCCTTTAATCAAGGACATCTGGCGCAGGAATTTCAACAAGTGCAAAATCTTT
GCCTTGCAACGACCTTATCGATTAATAAGTGGAATGGGCAAACGACTGTTCAATTAATGTTGGAAGATGCGCGTGTTGAG
GGTGTTCAGTTGATTGATATTCGCTCCAAAACGGCTAGCCTTCCAGAACGTGTTCCAGTATTGACTGAAGATAGCACGGC
AAATGAAGTTGTGGTGTTAGACATCCCTGATAAGGCTGAAGAATTAAAATCACTCTTTGTGGGTCGTCATTTTGAAGCCA
TTTATTTTAAAAATCATATTAAACGTGCTTATTATCTGACAGGCTATGGCACACGTGACCAATTTGCTAAGCTTTATAAA
ACCATTTATCAATTCCCAGAATTTGATGTCCGCTACAAGTTGAAAGAATTGAGCCAATACCTTAATATCCCTGATATTTT
GCTCATTAAAATGATTCAGATTTTTGATGAATTAGATTTTGTAACCATTACAGATGGTGTTATGGTCGTCAACAAAGATG
CTCAGAAACGCAGTATTTCAGAAAGCCAAATCTACCAAGACCTCAAACAACAAGTTAAATTCCAAGAGCTAATGGCGCTC
GGAACCCCACAAGAAATTTACGATTGGCTGACTGATGAAGATGACTAA

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(450-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-730)

DHHA1 domain (DHHA1)

(317-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.297

100

0.678
  recJ Bacillus subtilis subsp. subtilis str. 168

39.046

100

0.412

Multiple sequence alignment