Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   ACLQ7P_RS18860 Genome accession   NZ_CP181322
Coordinates   3520556..3522880 (-) Length   774 a.a.
NCBI ID   WP_103330120.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3515556..3527880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS18850 (ACLQ7P_18850) cysI 3516827..3518542 (-) 1716 WP_017696388.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  ACLQ7P_RS18855 (ACLQ7P_18855) cysJ 3518568..3520385 (-) 1818 WP_103330121.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  ACLQ7P_RS18860 (ACLQ7P_18860) helD 3520556..3522880 (-) 2325 WP_103330120.1 DNA helicase IV Machinery gene
  ACLQ7P_RS18865 (ACLQ7P_18865) yvgT 3523074..3523682 (-) 609 WP_003219999.1 trimeric intracellular cation channel family protein -
  ACLQ7P_RS18870 (ACLQ7P_18870) bdbC 3523868..3524284 (-) 417 WP_024572513.1 disulfide oxidoreductase -
  ACLQ7P_RS18875 (ACLQ7P_18875) bdbD 3524289..3524957 (-) 669 WP_003228414.1 disulfide bond formation protein BdbD -
  ACLQ7P_RS18880 (ACLQ7P_18880) cadA 3525072..3527180 (-) 2109 WP_121591166.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 90018.60 Da        Isoelectric Point: 6.1780

>NTDB_id=979287 ACLQ7P_RS18860 WP_103330120.1 3520556..3522880(-) (helD) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MNQQDKEWKEEQSRIDEVLKELEKKERFLETSAGGLKHDIIGLRKSFWEDVKVNFDDAHEAIETMASIKQQAELLSDREQ
NHRRMDQQLKRIQQLKKSPYFGRIDFIENGEEQAEQIYIGLASCLDEKEEHFLIYDWRAPISSLYYNYSPGKAEYEVPGE
TIEGEMVLKRQFMIKNGTLKAMFNTDMTIGDEMLQEVLSHHSDTQMKNIVSTIQKEQNQIIRNEKSKILIVQGAAGSGKT
SAALQRVAYLLYRHRGVIDAGQIVLFSPNFLFNSYVSSVLPELGEENMEQATFQEYIEHRLGRRFQCESPFDQLEYCLTE
TKEGDFPTRLAGITWKAGLSFQQFIDEYVTWLSFEGMIFKNIIFRGQKLITKEHIQSYFYSLDQNHSIPNRMEQTAKWLL
SELNKLEKKERRKDWVVHEAELLDKEDYLDVYKKLQERKRFSESTFNDYQREQQLLAAIIVKKAFKPLKQAVRLLAFLDV
PQMYLQLFSGWGGKFQHEKVAAIGELTRLAFTDNKLLYEDAAPFLYMQDLIEGRKKNTKIKHLFIDEAQDYSPFQMAYMR
SIFPAASMTVLGDINQSIYAHTVQGDQRMDASFEDEPAEYVRLKRTYRSTRQIVEFTKAMLQDGEDIEPFNRSGEMPLVV
KTEGHESLCQKLAQEIGRLKKKGHETIAVICKTAQQCIQAHAHMSEYTDVRLIHKENQPFQKGVCVIPVYLAKGIEFDAV
LVYDASEEHYHTEHDRRLLYTACTRAMHMLAVFYTGAASPFVTAVPPHLYQIAE

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=979287 ACLQ7P_RS18860 WP_103330120.1 3520556..3522880(-) (helD) [Bacillus subtilis subsp. subtilis strain JCK-1398]
ATGAATCAGCAGGATAAGGAATGGAAGGAAGAGCAGTCGAGAATAGATGAGGTGCTGAAGGAGCTCGAAAAAAAAGAGCG
GTTTCTGGAAACGTCTGCGGGCGGGTTGAAGCATGATATCATCGGATTAAGAAAAAGCTTTTGGGAGGATGTTAAGGTTA
ATTTTGATGATGCCCATGAAGCGATTGAAACGATGGCAAGCATTAAGCAGCAGGCAGAGCTGCTGTCTGATCGGGAACAG
AATCATCGGCGCATGGATCAGCAGCTCAAACGAATTCAACAATTAAAAAAATCGCCTTATTTCGGCCGGATTGATTTTAT
TGAAAACGGCGAGGAGCAGGCAGAGCAAATTTATATCGGTTTAGCTTCCTGTTTGGATGAGAAGGAGGAACACTTTCTGA
TCTATGACTGGAGGGCGCCGATATCAAGTTTGTACTACAATTATTCCCCAGGAAAAGCGGAGTACGAGGTGCCCGGTGAA
ACGATAGAAGGGGAAATGGTGCTGAAACGCCAGTTTATGATCAAAAACGGCACTCTCAAGGCGATGTTTAATACCGATAT
GACGATTGGCGATGAAATGCTGCAAGAGGTATTAAGCCACCATTCCGATACCCAAATGAAAAACATCGTGTCTACGATTC
AGAAAGAACAAAATCAGATTATCCGTAATGAAAAAAGCAAAATCCTGATCGTGCAGGGAGCGGCTGGCAGCGGGAAAACA
TCGGCTGCGCTTCAGCGTGTCGCTTATTTGTTATACAGGCACCGCGGCGTCATTGATGCCGGACAAATCGTTTTGTTTTC
TCCCAACTTCTTATTTAACAGCTATGTCTCCTCTGTTTTGCCGGAGTTAGGAGAAGAGAATATGGAACAGGCGACGTTTC
AGGAATATATCGAGCATCGTCTTGGCCGCAGGTTTCAATGTGAAAGCCCCTTTGACCAGCTTGAATATTGCCTGACTGAA
ACAAAGGAAGGCGATTTTCCAACAAGGCTTGCGGGAATCACATGGAAGGCGGGTTTATCTTTTCAGCAATTCATTGATGA
ATACGTCACATGGCTTTCCTTTGAAGGGATGATTTTTAAAAATATCATATTCCGCGGACAAAAGCTGATCACAAAGGAAC
ACATTCAATCCTATTTTTACTCATTGGATCAAAATCACTCCATTCCGAACCGGATGGAGCAAACCGCGAAGTGGCTGCTG
AGTGAGCTTAACAAGCTTGAGAAAAAGGAACGGCGAAAGGATTGGGTCGTTCATGAAGCTGAGCTGCTCGACAAAGAGGA
CTACTTGGACGTGTATAAGAAACTGCAGGAAAGGAAACGGTTCAGCGAGAGTACGTTTAACGATTATCAAAGAGAGCAGC
AGCTGCTTGCCGCCATCATTGTGAAAAAAGCTTTCAAACCGCTCAAACAAGCGGTCAGGCTCCTTGCATTTCTTGATGTT
CCACAGATGTATTTGCAATTGTTTTCTGGCTGGGGAGGAAAATTTCAGCATGAGAAGGTGGCCGCGATAGGTGAGCTGAC
CCGTTTGGCATTTACGGATAATAAATTGCTCTATGAGGACGCGGCACCGTTTCTTTATATGCAGGATCTGATTGAGGGCA
GAAAGAAAAATACGAAGATCAAACATCTATTTATTGACGAAGCCCAAGACTATTCACCGTTTCAGATGGCTTACATGAGA
AGCATTTTTCCGGCTGCCAGCATGACAGTGCTCGGTGATATCAATCAGTCCATCTACGCGCATACCGTACAAGGGGATCA
GCGTATGGATGCGAGCTTTGAGGATGAGCCTGCTGAGTATGTTCGTTTAAAGAGAACATACAGATCAACAAGGCAGATTG
TCGAATTTACCAAAGCGATGCTTCAAGATGGAGAGGATATTGAGCCGTTTAATAGAAGCGGGGAAATGCCGCTCGTTGTC
AAAACTGAAGGACATGAGAGCCTTTGCCAAAAGCTCGCGCAAGAAATTGGACGGCTCAAGAAAAAAGGGCACGAAACAAT
AGCCGTCATCTGCAAGACTGCGCAACAATGCATACAGGCGCACGCCCACATGAGTGAATATACAGATGTTCGCCTAATTC
ATAAAGAAAATCAACCATTCCAAAAGGGTGTTTGCGTGATTCCGGTGTATTTAGCGAAGGGAATTGAATTTGACGCAGTG
CTTGTCTATGATGCATCTGAAGAACACTATCATACAGAGCACGACCGCAGGCTTTTATATACTGCGTGCACCCGTGCGAT
GCACATGCTGGCGGTATTTTATACAGGTGCAGCCAGTCCGTTTGTAACCGCTGTGCCGCCTCACTTATATCAGATTGCTG
AATGA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-751)

AAA domain (AAA_19)

(217-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

97.287

100

0.973