Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ACLQ7P_RS13120 Genome accession   NZ_CP181322
Coordinates   2418264..2418695 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2413264..2423695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS13110 (ACLQ7P_13110) hexA 2414744..2417320 (-) 2577 WP_213382488.1 DNA mismatch repair protein MutS Machinery gene
  ACLQ7P_RS13115 (ACLQ7P_13115) cotE 2417457..2418002 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  ACLQ7P_RS13120 (ACLQ7P_13120) ymcA 2418264..2418695 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  ACLQ7P_RS13125 (ACLQ7P_13125) miaB 2418697..2420226 (-) 1530 WP_121591817.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACLQ7P_RS13130 (ACLQ7P_13130) kbl 2420374..2421552 (-) 1179 WP_326121302.1 glycine C-acetyltransferase -
  ACLQ7P_RS13135 (ACLQ7P_13135) tdh 2421565..2422608 (-) 1044 WP_017694900.1 L-threonine 3-dehydrogenase -
  ACLQ7P_RS13140 (ACLQ7P_13140) spoVS 2422874..2423134 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=979246 ACLQ7P_RS13120 WP_003231834.1 2418264..2418695(-) (ymcA) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=979246 ACLQ7P_RS13120 WP_003231834.1 2418264..2418695(-) (ymcA) [Bacillus subtilis subsp. subtilis strain JCK-1398]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1