Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACLQ7P_RS10620 Genome accession   NZ_CP181322
Coordinates   2016412..2017548 (-) Length   378 a.a.
NCBI ID   WP_416247589.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2011412..2022548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS10575 (ACLQ7P_10575) - 2011506..2011880 (+) 375 WP_416247649.1 YrhA family protein -
  ACLQ7P_RS10580 (ACLQ7P_10580) yokK 2011936..2012514 (+) 579 WP_416247588.1 SMI1/KNR4 family protein -
  ACLQ7P_RS10585 (ACLQ7P_10585) yokL 2012550..2013083 (+) 534 WP_043857662.1 GNAT family N-acetyltransferase -
  ACLQ7P_RS10590 (ACLQ7P_10590) bsrG 2013368..2013484 (-) 117 WP_009967548.1 type I toxin-antitoxin system toxin BsrG -
  ACLQ7P_RS10595 (ACLQ7P_10595) - 2013717..2014076 (+) 360 WP_041338710.1 hypothetical protein -
  ACLQ7P_RS10600 (ACLQ7P_10600) - 2014120..2014455 (-) 336 WP_041054825.1 hypothetical protein -
  ACLQ7P_RS10605 (ACLQ7P_10605) yolD 2014629..2014961 (+) 333 WP_121590876.1 YolD-like family protein -
  ACLQ7P_RS10610 (ACLQ7P_10610) uvrX 2014954..2016204 (+) 1251 WP_128751229.1 DNA polymerase thumb domain-containing protein -
  ACLQ7P_RS10615 (ACLQ7P_10615) - 2016246..2016422 (-) 177 WP_042976278.1 hypothetical protein -
  ACLQ7P_RS10620 (ACLQ7P_10620) rapC 2016412..2017548 (-) 1137 WP_416247589.1 aspartate phosphatase Regulator
  ACLQ7P_RS10625 (ACLQ7P_10625) - 2017676..2017927 (-) 252 WP_017696899.1 phage holin -
  ACLQ7P_RS10630 (ACLQ7P_10630) - 2017949..2018341 (-) 393 WP_017696898.1 hypothetical protein -
  ACLQ7P_RS10635 (ACLQ7P_10635) blyA 2018458..2019561 (-) 1104 WP_121591831.1 N-acetylmuramoyl-L-alanine amidase BlyA -
  ACLQ7P_RS10640 (ACLQ7P_10640) - 2019732..2020064 (-) 333 WP_071581347.1 hypothetical protein -
  ACLQ7P_RS10645 (ACLQ7P_10645) - 2020078..2021856 (-) 1779 WP_416247590.1 hypothetical protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44646.25 Da        Isoelectric Point: 5.2309

>NTDB_id=979238 ACLQ7P_RS10620 WP_416247589.1 2016412..2017548(-) (rapC) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MEQMISSSKVGVKINEWYKYIRLFSVPDSEILKAEIEEEIRHMKEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKIS
DLLEKIESNQTDLKGILEYYFNFFRGMYEFEQYEYLRAISFYNRAEKKISIVPDEIERAEFHYKIAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEINMPRLIGSSLYNLGLCSFATGNMEKAL
EYFKEGATTYQSNSLHNSSRLLDILLMLAKTHFKLSNSVDGKQVCEQGLMLSKDLNDDVLGKMFDFLMALFVENDKDRLF
KILDYLESKAMLSDVEDLASDAAKYYNEKEDHKVAVAYYEKVLYARKQIQRGDCLYET

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=979238 ACLQ7P_RS10620 WP_416247589.1 2016412..2017548(-) (rapC) [Bacillus subtilis subsp. subtilis strain JCK-1398]
TTGGAGCAGATGATCTCTTCTTCTAAAGTTGGAGTGAAAATAAATGAGTGGTATAAATACATAAGATTATTTAGTGTCCC
AGATTCAGAAATATTGAAAGCTGAAATTGAGGAAGAAATAAGGCATATGAAGGAAGACCAAGATTTATTGCTGTACTATT
CTCTCATGTGTTTTCGCCATCAATTAATGCTGGATTACCTTGAACCAAAAACAATGAACGAAGAACGACCTAAAATTTCT
GACTTATTAGAAAAGATCGAAAGTAACCAAACTGATTTGAAAGGGATTCTTGAATATTATTTTAACTTTTTCCGTGGAAT
GTATGAATTTGAACAGTACGAATATCTTAGAGCAATAAGTTTTTACAACCGAGCAGAAAAGAAGATATCTATTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCATTATAAAATTGCTGAAGTGTATTATCACATGAAGCAAACTCACATGTCTATGCAC
CATATTGTTCAAGCGATAGAAACCTACAAAGCGCACGAGACATACTCAATAAGAGTAATTCAATGTTCGTTTGTCATCGG
TCTTAATTATTTAGACATGGAATATCCAGAAAAAGCAATACCGCATTTTATGAATGCATTAAAACAAGCACAAGAGATTA
ATATGCCTCGGTTAATAGGCTCTTCTTTGTATAATCTCGGTTTATGCTCATTCGCAACAGGAAATATGGAGAAGGCTTTA
GAGTATTTTAAAGAAGGGGCTACAACTTACCAAAGTAATTCTCTTCACAATTCTAGCCGACTGCTAGACATTCTTTTAAT
GTTGGCCAAAACACACTTTAAATTATCCAACTCTGTTGATGGGAAACAGGTTTGTGAACAAGGTCTTATGCTGTCTAAAG
ATTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGCTCTATTCGTTGAGAATGATAAAGACCGACTTTTT
AAAATTTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGACGTGGAGGATTTAGCATCAGATGCAGCGAAGTATTACAA
TGAAAAAGAAGACCATAAAGTGGCTGTTGCTTATTATGAAAAAGTGCTTTATGCCCGTAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAACTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_8)

(222-245)

Tetratricopeptide repeat (TPR_8)

(343-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

46.95

99.735

0.468
  rapF Bacillus subtilis subsp. subtilis str. 168

45.789

100

0.46