Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACLQ7P_RS08280 Genome accession   NZ_CP181322
Coordinates   1621121..1621456 (-) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0ABU0V3E1
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1616121..1626456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS08245 (ACLQ7P_08245) comGG 1616227..1616601 (+) 375 WP_032726157.1 ComG operon protein ComGG Machinery gene
  ACLQ7P_RS08250 (ACLQ7P_08250) spoIITA 1616672..1616851 (+) 180 WP_014480252.1 YqzE family protein -
  ACLQ7P_RS08255 (ACLQ7P_08255) yqzG 1616893..1617219 (-) 327 WP_026113671.1 YqzG/YhdC family protein -
  ACLQ7P_RS08260 (ACLQ7P_08260) tapA 1617490..1618245 (+) 756 WP_017696199.1 amyloid fiber anchoring/assembly protein TapA -
  ACLQ7P_RS08265 (ACLQ7P_08265) sipW 1618229..1618801 (+) 573 WP_072557060.1 signal peptidase I SipW -
  ACLQ7P_RS08270 (ACLQ7P_08270) tasA 1618866..1619651 (+) 786 WP_017696201.1 biofilm matrix protein TasA -
  ACLQ7P_RS08275 (ACLQ7P_08275) - 1619702..1620949 (-) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -
  ACLQ7P_RS08280 (ACLQ7P_08280) sinR 1621121..1621456 (-) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ACLQ7P_RS08285 (ACLQ7P_08285) sinI 1621490..1621663 (-) 174 WP_003230187.1 anti-repressor SinI Regulator
  ACLQ7P_RS08290 (ACLQ7P_08290) yqhG 1621846..1622640 (-) 795 WP_043857814.1 YqhG family protein -
  ACLQ7P_RS08295 (ACLQ7P_08295) hepAA 1622661..1624334 (-) 1674 WP_017696203.1 DEAD/DEAH box helicase -
  ACLQ7P_RS08300 (ACLQ7P_08300) gcvT 1624775..1625863 (+) 1089 WP_416247469.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=979229 ACLQ7P_RS08280 WP_003226345.1 1621121..1621456(-) (sinR) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=979229 ACLQ7P_RS08280 WP_003226345.1 1621121..1621456(-) (sinR) [Bacillus subtilis subsp. subtilis strain JCK-1398]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment