Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACLQ7P_RS06950 Genome accession   NZ_CP181322
Coordinates   1391185..1392321 (+) Length   378 a.a.
NCBI ID   WP_080333377.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1386185..1397321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS06930 (ACLQ7P_06930) uxaA 1386655..1388148 (+) 1494 WP_326122084.1 altronate dehydratase family protein -
  ACLQ7P_RS06935 (ACLQ7P_06935) yjnA 1388187..1388951 (-) 765 WP_095010685.1 sulfite exporter TauE/SafE family protein -
  ACLQ7P_RS06940 (ACLQ7P_06940) bstD 1389176..1389640 (-) 465 WP_121591704.1 DinB family protein -
  ACLQ7P_RS06945 (ACLQ7P_06945) yjoB 1389789..1391039 (+) 1251 Protein_1304 ATPase YjoB -
  ACLQ7P_RS06950 (ACLQ7P_06950) rapC 1391185..1392321 (+) 1137 WP_080333377.1 response regulator aspartate phosphatase RapA Regulator
  ACLQ7P_RS06955 (ACLQ7P_06955) phrA 1392311..1392445 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  ACLQ7P_RS06960 (ACLQ7P_06960) yjpA 1392476..1392733 (-) 258 WP_416247442.1 YciI family protein -
  ACLQ7P_RS06965 (ACLQ7P_06965) xlyB 1392855..1393808 (+) 954 WP_041333906.1 N-acetylmuramoyl-L-alanine amidase -
  ACLQ7P_RS06970 (ACLQ7P_06970) yjqA 1393847..1394224 (-) 378 WP_014476529.1 PH domain-containing protein -
  ACLQ7P_RS06975 (ACLQ7P_06975) pghB 1394330..1394932 (+) 603 WP_413596686.1 poly-gamma-glutamate hydrolase family protein -
  ACLQ7P_RS06980 (ACLQ7P_06980) xpdC 1395009..1395845 (+) 837 WP_041333900.1 manganese catalase family protein -
  ACLQ7P_RS06985 (ACLQ7P_06985) xkdA 1395889..1396485 (-) 597 WP_024572596.1 ImmA/IrrE family metallo-endopeptidase -
  ACLQ7P_RS06990 (ACLQ7P_06990) xre 1396648..1396989 (-) 342 WP_017695142.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44947.14 Da        Isoelectric Point: 4.7582

>NTDB_id=979211 ACLQ7P_RS06950 WP_080333377.1 1391185..1392321(+) (rapC) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKSIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPAKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=979211 ACLQ7P_RS06950 WP_080333377.1 1391185..1392321(+) (rapC) [Bacillus subtilis subsp. subtilis strain JCK-1398]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGAGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATTGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGATTATTATTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAGCATTGACACAGAATCGGTCTCA
CACACATTTCAATTTCTAGAAGAACATATGCTGTATCCTTATATTGAGGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGCAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

45.213

99.471

0.45
  rapF Bacillus subtilis subsp. subtilis str. 168

41.425

100

0.415