Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACLQ7P_RS04380 Genome accession   NZ_CP181322
Coordinates   895540..896256 (+) Length   238 a.a.
NCBI ID   WP_121591517.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 890540..901256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS04350 (ACLQ7P_04350) - 891039..891176 (+) 138 WP_072557053.1 hypothetical protein -
  ACLQ7P_RS04355 (ACLQ7P_04355) yflB 891195..891587 (+) 393 WP_088272231.1 DUF1992 domain-containing protein -
  ACLQ7P_RS04360 (ACLQ7P_04360) - 891712..891916 (+) 205 Protein_808 sodium:alanine symporter family protein -
  ACLQ7P_RS04365 (ACLQ7P_04365) - 891912..892241 (-) 330 Protein_809 spore germination protein -
  ACLQ7P_RS04370 (ACLQ7P_04370) treP 892348..893760 (+) 1413 WP_416247375.1 PTS system trehalose-specific EIIBC component -
  ACLQ7P_RS04375 (ACLQ7P_04375) treC 893831..895519 (+) 1689 WP_121591516.1 alpha,alpha-phosphotrehalase -
  ACLQ7P_RS04380 (ACLQ7P_04380) treR 895540..896256 (+) 717 WP_121591517.1 trehalose operon repressor Regulator
  ACLQ7P_RS04385 (ACLQ7P_04385) hypO 896396..897061 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27756.75 Da        Isoelectric Point: 6.9163

>NTDB_id=979188 ACLQ7P_RS04380 WP_121591517.1 895540..896256(+) (treR) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MKVNKFITIYKDIAQQIDGGLWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIKGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=979188 ACLQ7P_RS04380 WP_121591517.1 895540..896256(+) (treR) [Bacillus subtilis subsp. subtilis strain JCK-1398]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGATGGCGGCCTATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAAGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAACTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGGAAGATTGACG
GGGAACATGTGATTTTGGACAAGGACTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416

Multiple sequence alignment