Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACGHT2_RS03040 Genome accession   NZ_AP031455
Coordinates   544368..546026 (+) Length   552 a.a.
NCBI ID   WP_111718190.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain k46-0107-A9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 539368..551026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHT2_RS03010 (K460107A9_05140) - 539640..540476 (+) 837 WP_003063733.1 NAD(P)H-hydrate dehydratase -
  ACGHT2_RS03015 (K460107A9_05150) xseA 540678..542006 (+) 1329 WP_013851578.1 exodeoxyribonuclease VII large subunit -
  ACGHT2_RS03020 (K460107A9_05160) - 541996..542211 (+) 216 WP_003063737.1 exodeoxyribonuclease VII small subunit -
  ACGHT2_RS03025 (K460107A9_05170) - 542211..543080 (+) 870 WP_003063739.1 polyprenyl synthetase family protein -
  ACGHT2_RS03030 (K460107A9_05180) - 543073..543897 (+) 825 WP_003063741.1 TlyA family RNA methyltransferase -
  ACGHT2_RS03035 (K460107A9_05190) - 543884..544354 (+) 471 WP_003063742.1 arginine repressor -
  ACGHT2_RS03040 (K460107A9_05200) recN 544368..546026 (+) 1659 WP_111718190.1 DNA repair protein RecN Machinery gene
  ACGHT2_RS03045 (K460107A9_05210) - 546164..547000 (+) 837 WP_013851580.1 DegV family protein -
  ACGHT2_RS03050 (K460107A9_05220) - 546993..547841 (+) 849 WP_003063748.1 SGNH/GDSL hydrolase family protein -
  ACGHT2_RS03055 (K460107A9_05230) - 547810..548412 (+) 603 WP_003063750.1 YpmS family protein -
  ACGHT2_RS03060 (K460107A9_05240) - 548506..548781 (+) 276 WP_003063767.1 HU family DNA-binding protein -
  ACGHT2_RS03065 (K460107A9_05250) - 548967..549161 (+) 195 WP_003063769.1 hypothetical protein -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62422.61 Da        Isoelectric Point: 4.4877

>NTDB_id=97917 ACGHT2_RS03040 WP_111718190.1 544368..546026(+) (recN) [Streptococcus pasteurianus strain k46-0107-A9]
MLLEISIKNFAIIEEISLTFENGMTVLTGETGAGKSIIIDAMNLMLGARASLDVIRHGANKAEIEGLFSVGENPALTQIL
EENGIDVTEELIIRRDILQNGRSIGRINGQMVNLTTLRAVGQYLVDIHGQHDQEELMKPNMHIRMLDEFGNEQFADVKKH
YQELFESYRQLRKRVVTKQKNEQEHKARIEMLEFQIAEIEAATLKSGEDQVLNQKRDKLLNHKNIADTLTNAYVMLDDEE
FSSLSNIRSAMNDLMTLEEFDADYKEMSANVSEAYYILEEVTKHLGDVIDDLDFDAGSLQQIEARLEVIYSITRKYGGSV
DDVLEYYDNITKEYNLLTGNDESSDDMEKALKRLEKELIVAAEELSQERHALAKNLEAEIKQELADLYMEKADFQVQFTK
GKFNRDGNETVEFYISTNPGEGFKPLVKVASGGEISRLMLAIKSAFSRKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
SNGQVLAISHLPQVIAIADYQFFIEKRSDENTTVSTVRLLTEEERVEEIAKMLAGSDITEMAREQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=97917 ACGHT2_RS03040 WP_111718190.1 544368..546026(+) (recN) [Streptococcus pasteurianus strain k46-0107-A9]
ATGCTTTTAGAAATTTCCATTAAAAATTTTGCCATTATCGAAGAAATCTCGCTTACTTTTGAAAATGGTATGACGGTTTT
GACAGGGGAAACTGGAGCGGGGAAGTCGATTATTATTGATGCCATGAACCTCATGTTGGGGGCGCGGGCTAGTCTTGACG
TTATTCGTCATGGGGCTAACAAGGCTGAAATTGAAGGGCTTTTTTCGGTTGGTGAAAATCCTGCGCTCACACAGATTTTG
GAAGAAAATGGCATTGATGTGACAGAAGAATTGATTATTCGCCGTGACATTCTGCAAAATGGTCGTTCTATCGGTCGTAT
CAACGGACAAATGGTGAATCTGACAACGTTACGTGCAGTTGGGCAGTATCTGGTTGATATTCATGGACAACATGACCAAG
AAGAGTTGATGAAGCCCAATATGCACATTCGGATGTTGGATGAATTTGGTAATGAACAGTTTGCTGATGTCAAAAAACAT
TACCAAGAGCTTTTTGAAAGTTATCGTCAATTGCGTAAGCGTGTCGTGACCAAGCAAAAAAATGAACAAGAGCATAAAGC
GCGTATTGAAATGTTAGAATTTCAGATAGCAGAGATTGAAGCGGCAACCTTGAAATCTGGTGAGGACCAGGTACTCAATC
AAAAACGTGATAAATTGCTTAATCATAAAAACATTGCAGATACGTTGACCAATGCTTATGTCATGCTTGATGACGAAGAA
TTTTCAAGTCTATCTAACATTCGTTCAGCCATGAATGATTTGATGACGCTCGAAGAATTTGATGCTGACTATAAAGAAAT
GTCAGCTAACGTTTCAGAGGCTTATTATATCCTAGAAGAAGTCACGAAACACCTAGGTGATGTCATTGATGACCTTGATT
TTGATGCGGGAAGCTTGCAACAAATTGAAGCGCGCCTAGAGGTGATTTATAGCATTACACGCAAATATGGCGGTAGTGTT
GATGATGTTTTAGAGTATTATGATAATATCACCAAGGAATACAATCTTTTGACTGGAAATGATGAGTCATCTGATGACAT
GGAAAAAGCCCTTAAACGCTTGGAAAAAGAATTGATTGTTGCTGCTGAAGAACTCAGTCAAGAACGCCATGCCTTGGCTA
AAAATTTGGAAGCTGAAATCAAGCAAGAGTTGGCTGATTTGTACATGGAAAAGGCTGATTTTCAAGTCCAATTCACCAAA
GGAAAATTCAACCGTGATGGAAATGAAACTGTTGAATTTTACATTTCAACGAACCCTGGTGAAGGCTTTAAACCACTCGT
TAAGGTTGCGTCTGGTGGTGAAATTTCTCGTTTAATGTTGGCTATCAAATCAGCATTTTCACGTAAAGAGGACAAAACAA
GTATCGTCTTTGACGAAGTGGATACTGGTGTATCTGGTCGCGTTGCGCAAGCTATTGCCCAAAAAATCTATAAAATCGGA
AGTAACGGACAAGTCTTGGCAATATCTCATTTACCACAAGTGATTGCCATTGCTGATTATCAGTTCTTTATCGAAAAACG
CAGTGATGAAAATACGACTGTTTCAACGGTTCGCTTGTTGACCGAAGAAGAACGAGTAGAAGAAATCGCTAAAATGCTTG
CTGGTAGCGATATTACTGAAATGGCACGCGAACAAGCTCGCGAACTATTGAAGAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.937

100

0.453