Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   ACLQ7P_RS00330 Genome accession   NZ_CP181322
Coordinates   59381..59611 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54381..64611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS00300 (ACLQ7P_00300) ridA 54545..54922 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  ACLQ7P_RS00305 (ACLQ7P_00305) spoVG 55117..55410 (+) 294 WP_003218346.1 septation regulator SpoVG -
  ACLQ7P_RS00310 (ACLQ7P_00310) glmU 55603..56973 (+) 1371 WP_416247269.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ACLQ7P_RS00315 (ACLQ7P_00315) prsS 56996..57949 (+) 954 WP_069837180.1 ribose-phosphate diphosphokinase -
  ACLQ7P_RS00320 (ACLQ7P_00320) rplYB 58034..58648 (+) 615 WP_069963938.1 50S ribosomal protein L25/general stress protein Ctc -
  ACLQ7P_RS00325 (ACLQ7P_00325) pth 58755..59321 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  ACLQ7P_RS00330 (ACLQ7P_00330) subA/fin 59381..59611 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  ACLQ7P_RS00335 (ACLQ7P_00335) mfd 59681..63214 (+) 3534 WP_003243453.1 transcription-repair coupling factor -
  ACLQ7P_RS00340 (ACLQ7P_00340) spoVT 63350..63886 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=979166 ACLQ7P_RS00330 WP_003243417.1 59381..59611(+) (subA/fin) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=979166 ACLQ7P_RS00330 WP_003243417.1 59381..59611(+) (subA/fin) [Bacillus subtilis subsp. subtilis strain JCK-1398]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment