Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACM67D_RS11315 Genome accession   NZ_CP181245
Coordinates   2149299..2150267 (-) Length   322 a.a.
NCBI ID   WP_139595865.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain LNP 16626     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2144299..2155267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM67D_RS11285 (ACM67D_11285) - 2144883..2145899 (-) 1017 WP_029671528.1 YadA-like family protein -
  ACM67D_RS11290 (ACM67D_11290) - 2146017..2146070 (-) 54 Protein_2186 hypothetical protein -
  ACM67D_RS11295 (ACM67D_11295) - 2146134..2146787 (+) 654 WP_416192811.1 IS1595 family transposase -
  ACM67D_RS11300 (ACM67D_11300) - 2146822..2147580 (-) 759 WP_003705058.1 ABC transporter ATP-binding protein -
  ACM67D_RS11305 (ACM67D_11305) - 2147664..2148290 (-) 627 WP_003690385.1 FmdE family protein -
  ACM67D_RS11310 (ACM67D_11310) - 2148335..2149309 (-) 975 WP_010951403.1 iron chelate uptake ABC transporter family permease subunit -
  ACM67D_RS11315 (ACM67D_11315) ceuB 2149299..2150267 (-) 969 WP_139595865.1 ABC transporter permease Machinery gene
  ACM67D_RS11320 (ACM67D_11320) - 2150286..2150477 (-) 192 WP_162098494.1 hypothetical protein -
  ACM67D_RS11325 (ACM67D_11325) - 2150495..2151466 (-) 972 WP_010951405.1 siderophore ABC transporter substrate-binding protein -
  ACM67D_RS11330 (ACM67D_11330) fetA 2151618..2153759 (-) 2142 WP_010951406.1 TonB-dependent siderophore receptor FetA/FrpB -
  ACM67D_RS11335 (ACM67D_11335) - 2154265..2154555 (+) 291 WP_003687059.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34428.70 Da        Isoelectric Point: 9.9393

>NTDB_id=979158 ACM67D_RS11315 WP_139595865.1 2149299..2150267(-) (ceuB) [Neisseria gonorrhoeae strain LNP 16626]
MTAKPFSLNLANLLLPAVLFAVSLSVGIADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFVAY
EFEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLTGDRLRQSLPAVALLGASLVLLCDIIGRMIVFPFEIPVSTVFGVLGTALFLWLLLRKPAY
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=979158 ACM67D_RS11315 WP_139595865.1 2149299..2150267(-) (ceuB) [Neisseria gonorrhoeae strain LNP 16626]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTATTGTTTGCCGTCAGCCTGTCGGTCGG
CATTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAGCAAGTGATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGTTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAGCTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTGTCGCGTAT
GAGTTTGAGATGCTGCAAATGTTGGGCGTGTGGCAGCAGGGCGACTTTTCAAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTGA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGACGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGCATGATTGTGTTTCCGT
TTGAAATTCCGGTCTCCACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTGTTGAGGAAACCCGCCTAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.86

93.478

0.391