Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAEO79_RS09125 Genome accession   NZ_CP151540
Coordinates   1885335..1887005 (-) Length   556 a.a.
NCBI ID   WP_379945727.1    Uniprot ID   -
Organism   Enterococcus devriesei strain Ed-CK-24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1880335..1892005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEO79_RS09095 (AAEO79_09085) - 1880414..1882603 (-) 2190 WP_379945725.1 penicillin-binding transpeptidase domain-containing protein -
  AAEO79_RS09100 (AAEO79_09090) ftsL 1882604..1882981 (-) 378 WP_071860870.1 cell division protein FtsL -
  AAEO79_RS09105 (AAEO79_09095) rsmH 1882969..1883940 (-) 972 WP_379945726.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  AAEO79_RS09110 (AAEO79_09100) mraZ 1883956..1884387 (-) 432 WP_071860868.1 division/cell wall cluster transcriptional repressor MraZ -
  AAEO79_RS09115 (AAEO79_09105) - 1884555..1884926 (-) 372 WP_071860867.1 DUF3397 domain-containing protein -
  AAEO79_RS09120 (AAEO79_09110) - 1885156..1885272 (+) 117 WP_071860866.1 DUF4044 domain-containing protein -
  AAEO79_RS09125 (AAEO79_09115) recN 1885335..1887005 (-) 1671 WP_379945727.1 DNA repair protein RecN Machinery gene
  AAEO79_RS09130 (AAEO79_09120) - 1887039..1887500 (-) 462 WP_216428428.1 arginine repressor -
  AAEO79_RS09135 (AAEO79_09125) - 1887521..1888336 (-) 816 WP_313629926.1 TlyA family RNA methyltransferase -
  AAEO79_RS09140 (AAEO79_09130) - 1888397..1889275 (-) 879 WP_379945728.1 polyprenyl synthetase family protein -
  AAEO79_RS09145 (AAEO79_09135) - 1889275..1889496 (-) 222 WP_071860861.1 exodeoxyribonuclease VII small subunit -
  AAEO79_RS09150 (AAEO79_09140) xseA 1889496..1890839 (-) 1344 WP_379945730.1 exodeoxyribonuclease VII large subunit -
  AAEO79_RS09155 (AAEO79_09145) - 1890855..1891712 (-) 858 WP_379945731.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62770.12 Da        Isoelectric Point: 4.7350

>NTDB_id=979036 AAEO79_RS09125 WP_379945727.1 1885335..1887005(-) (recN) [Enterococcus devriesei strain Ed-CK-24]
MLQELTIKNFAIISSLHLGFTDGMTALTGETGAGKSIIIDAVSLLAGARSSIEYIRQGSEKCLVEGLFDLPRQREFQVLM
EELGIEVDEAGLIVQRDLNVSGKSISRVNGRIVTLANLRRIGQFLVDIQGQNDHQELMHPESHLRLLDSFGDAPFQAIKR
DYQAAYQSYQTLANQVKKFKQNEQSFVQRIDMLTFQQEEIGNAELTLGEEEKLMEEREKLTNYQKIVDSLSYSYQAMTNE
ETSSLDAIGSASQELQTIASLDKDYETISDNVHSAYYLLQDAVSEIGRQLDLLELDEERLDLVNERLELIHQLKRKYGES
IATILSYYDQISQELLDSDFSGDKLEKLENELRAKEDKLQSLAKQLRRARKEMAKKLESAIQHELKDLYMENARFEVAFK
GSNYTHDGFDEVEFYITTNPGEPLKPLVKVASGGEISRVMLALKTIFSKTQGLTSIVFDEVDTGVSGRVAQAIADKIYQI
GKNSQALCITHLPQVAAKADHQLFIRKEIVKGRTLTKVEELTENERTEEIARMLAGTEITDLTVEHAKELLQLAKK

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=979036 AAEO79_RS09125 WP_379945727.1 1885335..1887005(-) (recN) [Enterococcus devriesei strain Ed-CK-24]
ATGTTACAGGAATTGACAATCAAAAATTTTGCGATTATTTCTTCTTTGCATTTAGGTTTTACCGATGGAATGACCGCGTT
AACAGGTGAAACCGGTGCAGGAAAATCGATCATTATTGATGCCGTTAGTTTGCTGGCTGGCGCCCGTTCGTCCATTGAAT
ACATTCGACAAGGCAGTGAAAAATGTTTGGTAGAGGGATTGTTTGATCTCCCTAGGCAGCGAGAGTTCCAAGTGTTAATG
GAGGAATTAGGAATTGAAGTGGACGAAGCTGGCTTGATCGTTCAACGGGATTTGAATGTCTCTGGTAAGAGTATTTCCCG
GGTAAATGGTCGGATTGTTACATTAGCCAATTTACGGCGCATCGGACAATTTCTAGTGGATATCCAAGGTCAGAATGACC
ACCAGGAACTGATGCATCCAGAATCACATTTGCGTTTGCTGGACAGCTTTGGAGATGCGCCTTTCCAAGCAATCAAACGA
GATTATCAAGCGGCCTATCAAAGCTATCAGACCTTAGCCAATCAAGTCAAAAAATTCAAACAAAATGAGCAATCCTTTGT
CCAACGAATCGATATGCTGACCTTTCAGCAAGAAGAGATCGGGAATGCTGAACTAACACTTGGCGAGGAAGAAAAGTTGA
TGGAGGAACGAGAAAAGCTGACGAATTATCAAAAAATCGTGGACAGCCTTTCTTACAGCTATCAGGCCATGACGAATGAA
GAAACTAGTTCCCTCGATGCGATTGGTTCCGCTAGTCAAGAGTTACAAACAATCGCTTCCTTAGACAAAGACTATGAAAC
GATATCTGACAATGTCCACAGTGCCTACTATTTATTGCAAGACGCAGTTAGTGAGATTGGTCGGCAGTTAGACCTCTTGG
AATTAGATGAAGAACGGTTGGATTTAGTCAACGAGCGGCTGGAGTTGATCCATCAATTGAAACGAAAGTATGGGGAGTCG
ATTGCAACGATTCTTAGCTACTACGATCAGATCAGCCAAGAATTATTGGATTCTGATTTTTCAGGTGATAAGCTAGAAAA
GTTAGAAAATGAGTTGCGTGCAAAAGAAGATAAGCTGCAGAGCTTAGCGAAACAATTACGACGAGCGCGTAAAGAAATGG
CCAAAAAATTGGAATCTGCGATTCAGCATGAGCTGAAAGATTTGTACATGGAAAATGCTCGCTTTGAGGTAGCCTTTAAG
GGAAGTAATTATACCCACGATGGCTTTGATGAAGTCGAATTTTATATTACAACGAATCCTGGGGAGCCATTGAAACCATT
AGTCAAAGTCGCTTCTGGCGGGGAAATTTCACGAGTGATGTTAGCTCTTAAAACAATTTTTTCAAAAACGCAAGGATTGA
CCAGTATCGTTTTTGATGAAGTAGATACTGGTGTGAGTGGACGCGTCGCTCAGGCGATCGCCGATAAGATTTATCAGATC
GGAAAAAATTCACAAGCCTTATGTATTACACATTTGCCACAAGTCGCTGCCAAAGCAGACCATCAATTATTTATCCGTAA
AGAAATCGTCAAAGGTCGGACACTGACAAAAGTGGAAGAGCTGACCGAAAACGAGCGAACAGAAGAAATTGCTCGAATGT
TAGCAGGAACCGAAATTACGGACTTAACAGTAGAACACGCAAAAGAATTATTACAATTGGCAAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.07

100

0.493

Multiple sequence alignment