Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AAEO79_RS03160 Genome accession   NZ_CP151540
Coordinates   640516..641238 (-) Length   240 a.a.
NCBI ID   WP_379946550.1    Uniprot ID   -
Organism   Enterococcus devriesei strain Ed-CK-24     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 635516..646238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEO79_RS03135 (AAEO79_03125) - 636393..636959 (+) 567 WP_216429555.1 TetR/AcrR family transcriptional regulator -
  AAEO79_RS03140 (AAEO79_03130) - 637074..637511 (+) 438 WP_071862263.1 DUF948 domain-containing protein -
  AAEO79_RS03145 (AAEO79_03135) - 637514..638074 (+) 561 WP_379946549.1 YtxH domain-containing protein -
  AAEO79_RS03150 (AAEO79_03140) - 638108..639208 (-) 1101 WP_216429556.1 Xaa-Pro peptidase family protein -
  AAEO79_RS03155 (AAEO79_03145) ccpA 639403..640404 (+) 1002 WP_071862260.1 catabolite control protein A -
  AAEO79_RS03160 (AAEO79_03150) treR 640516..641238 (-) 723 WP_379946550.1 trehalose operon repressor Regulator
  AAEO79_RS03165 (AAEO79_03155) treP 641604..643550 (+) 1947 WP_071862258.1 PTS system trehalose-specific EIIBC component -
  AAEO79_RS03170 (AAEO79_03160) treC 643567..645192 (+) 1626 WP_379946551.1 alpha,alpha-phosphotrehalase -
  AAEO79_RS03175 (AAEO79_03165) - 645240..645746 (-) 507 WP_379946552.1 QueT transporter family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27950.76 Da        Isoelectric Point: 6.8804

>NTDB_id=979017 AAEO79_RS03160 WP_379946550.1 640516..641238(-) (treR) [Enterococcus devriesei strain Ed-CK-24]
MKNYEVIYQTIERGILKGIYEADSYLPSENKLRQTYHVSRDTIRKALSLLMANGYIQKIQGKGSLVLKREQLRFPVSGLT
SYKELQNSYGYESRTEVVSLKKITIDENATRVTGFEAGVVCWELIRTRAIDQKKVILDKDLLSTAIVPELDTEIAKDSIY
RFFEDQLHLNISFAEKEITIDSLTEEDRDLLDLNQQDINIVSVKSRVFTSDARQFQYTESRHQVDKFRFFDFARRHPSTM

Nucleotide


Download         Length: 723 bp        

>NTDB_id=979017 AAEO79_RS03160 WP_379946550.1 640516..641238(-) (treR) [Enterococcus devriesei strain Ed-CK-24]
ATGAAAAATTACGAAGTCATCTATCAGACGATTGAACGAGGAATTTTAAAAGGGATCTATGAGGCGGATTCCTATTTACC
TAGTGAAAATAAATTGCGTCAGACCTATCATGTCTCCCGCGACACAATTCGTAAAGCCTTATCTCTTTTAATGGCCAACG
GCTATATTCAAAAAATCCAAGGTAAAGGCTCCCTTGTTTTGAAGCGAGAGCAATTGCGATTCCCTGTTTCTGGTCTGACC
AGCTATAAAGAACTGCAAAATTCCTATGGCTACGAGAGCCGCACCGAAGTGGTTAGCTTAAAAAAAATTACGATTGATGA
AAACGCCACACGCGTGACTGGGTTCGAAGCCGGCGTCGTTTGTTGGGAATTGATTCGCACCCGAGCGATCGACCAGAAGA
AGGTCATTCTTGATAAGGATCTACTTTCAACCGCGATTGTCCCAGAGCTGGATACCGAGATCGCCAAAGATTCTATCTAT
CGCTTTTTCGAGGATCAATTACACTTGAATATTTCTTTTGCAGAAAAAGAAATCACGATCGACTCATTGACTGAAGAAGA
TCGCGATTTATTAGATTTGAATCAACAGGATATTAATATCGTCAGCGTCAAAAGTCGAGTCTTTACTAGTGATGCCCGCC
AATTTCAATATACTGAAAGTCGTCATCAAGTCGATAAATTTCGCTTCTTTGATTTTGCCCGCCGTCACCCATCGACTATG
TAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

49.576

98.333

0.487

Multiple sequence alignment