Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAEO79_RS00440 Genome accession   NZ_CP151540
Coordinates   89549..90922 (+) Length   457 a.a.
NCBI ID   WP_071861782.1    Uniprot ID   -
Organism   Enterococcus devriesei strain Ed-CK-24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 84549..95922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEO79_RS00415 (AAEO79_00415) - 84560..85306 (+) 747 WP_379946256.1 TIGR03915 family putative DNA repair protein -
  AAEO79_RS00420 (AAEO79_00420) - 85296..85667 (-) 372 WP_379946257.1 TIGR02328 family protein -
  AAEO79_RS00425 (AAEO79_00425) - 85812..86768 (+) 957 WP_379946258.1 cation diffusion facilitator family transporter -
  AAEO79_RS00430 (AAEO79_00430) - 87007..88806 (+) 1800 WP_216429789.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  AAEO79_RS00435 (AAEO79_00435) - 89016..89522 (+) 507 WP_071861783.1 dUTP diphosphatase -
  AAEO79_RS00440 (AAEO79_00440) radA 89549..90922 (+) 1374 WP_071861782.1 DNA repair protein RadA Machinery gene
  AAEO79_RS00445 (AAEO79_00445) - 90980..92134 (+) 1155 WP_379946259.1 PIN/TRAM domain-containing protein -
  AAEO79_RS00450 (AAEO79_00450) gltX 92229..93686 (+) 1458 WP_379946260.1 glutamate--tRNA ligase -
  AAEO79_RS00455 (AAEO79_00455) epsC 94603..95136 (+) 534 WP_071861779.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49954.37 Da        Isoelectric Point: 7.0289

>NTDB_id=979007 AAEO79_RS00440 WP_071861782.1 89549..90922(+) (radA) [Enterococcus devriesei strain Ed-CK-24]
MAKKSKTQFICQECGYVSPKYLGRCPNCGNWNTMVEEIEQNHPEDRRNRVSLTGERAQPTKLKDVVFKKETRVQTELAEL
NRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSHQLAATGGTVLYVSGEESAQQIKLRAERLGSSDTDFYLYAETDMGEIS
RTIENLKPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGNIAGPRMLEHMVDTVLYF
EGEKHHSFRILRAVKNRFGSTNEIGIFEMRESGLVEVANPSQVFLEERLEGATGSAIVVAMEGSRPILVEVQALVTPTVF
GNAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAVAVAIASSYKENGTEATECFIGEIGLT
GEIRRVSSIEQRVKEASKLGFKKIYLPKNNMGEWTPPKGIELIPVATLGETLRKVFR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=979007 AAEO79_RS00440 WP_071861782.1 89549..90922(+) (radA) [Enterococcus devriesei strain Ed-CK-24]
TTGGCAAAAAAATCCAAGACGCAATTTATCTGTCAAGAGTGCGGTTATGTTTCGCCTAAATATCTGGGGCGCTGTCCCAA
CTGTGGTAATTGGAACACGATGGTGGAGGAAATCGAACAAAACCATCCAGAAGATCGCCGCAACCGGGTCAGTTTAACCG
GTGAACGAGCACAGCCAACCAAATTAAAAGACGTGGTCTTCAAAAAGGAGACGCGCGTTCAAACGGAACTCGCCGAATTG
AACCGCGTGCTAGGCGGTGGCGTGGTACCAGGTTCGCTCGTCTTAATCGGTGGTGATCCCGGAATCGGGAAGTCGACACT
GCTTTTACAAGTTTCGCATCAATTAGCGGCGACTGGCGGTACAGTTTTGTATGTGTCTGGTGAGGAAAGCGCGCAGCAAA
TTAAGTTGCGGGCAGAACGTCTAGGTTCTAGCGATACTGATTTTTACTTGTATGCCGAGACAGACATGGGAGAGATCAGC
CGTACGATTGAAAATCTGAAGCCGGATTATGTGATCATCGACTCGATCCAAACCATGACCCAGCCAGACATTACCAGTGT
GGCGGGTTCGGTCAGTCAAGTGCGAGAAACGACCGCGGAATTATTGAAGTTAGCGAAGACCAATGGCATTGCGATCTTTA
TCGTCGGTCACGTGACTAAAGAAGGAAACATCGCTGGTCCGCGAATGTTAGAGCATATGGTGGATACCGTGTTGTACTTT
GAAGGCGAGAAGCACCACAGCTTCCGGATCTTGCGGGCGGTGAAAAATCGTTTTGGTTCGACTAATGAGATCGGAATTTT
TGAAATGCGGGAAAGCGGCTTAGTTGAAGTGGCCAATCCTTCGCAGGTTTTCTTAGAAGAACGCTTGGAAGGAGCTACCG
GTTCGGCGATCGTCGTCGCCATGGAAGGCAGCCGGCCAATTTTAGTGGAGGTCCAGGCCTTAGTCACGCCAACGGTTTTC
GGCAATGCTAAACGGACGACGACGGGACTCGATTTTAATCGCGTTTCATTAATCATGGCGGTTCTAGAAAAACGGGCCGG
CCTACTGCTGCAAAACCAAGATGCCTATTTGAAAGCCGCTGGCGGCGTCAAGCTAAATGAGCCGGCGATTGACTTGGCGG
TAGCGGTAGCGATTGCTTCCAGCTACAAAGAAAACGGTACGGAGGCCACCGAGTGTTTTATCGGTGAAATTGGTTTGACC
GGCGAGATTCGCCGCGTCAGCAGTATTGAACAACGTGTCAAAGAAGCAAGTAAATTAGGCTTCAAAAAAATCTATTTACC
GAAGAACAATATGGGTGAATGGACACCGCCGAAGGGCATCGAATTGATTCCAGTGGCGACCTTAGGGGAAACCTTGAGAA
AAGTATTTCGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(58-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.561

99.781

0.744
  radA Streptococcus mitis SK321

74.342

99.781

0.742
  radA Streptococcus pneumoniae Rx1

74.342

99.781

0.742
  radA Streptococcus pneumoniae D39

74.342

99.781

0.742
  radA Streptococcus pneumoniae R6

74.342

99.781

0.742
  radA Streptococcus pneumoniae TIGR4

74.342

99.781

0.742
  radA Bacillus subtilis subsp. subtilis str. 168

65.854

98.687

0.65

Multiple sequence alignment