Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   ACM6AC_RS06095 Genome accession   NZ_CP181150
Coordinates   1262883..1264034 (+) Length   383 a.a.
NCBI ID   WP_154283930.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AG21-0600     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1257883..1269034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM6AC_RS06070 (ACM6AC_06070) yfmH 1258715..1260001 (+) 1287 WP_154283928.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACM6AC_RS06075 (ACM6AC_06075) ymfI 1260001..1260705 (+) 705 WP_154283929.1 elongation factor P 5-aminopentanone reductase -
  ACM6AC_RS06080 (ACM6AC_06080) - 1260810..1261637 (+) 828 WP_000214890.1 YmfK family protein -
  ACM6AC_RS06085 (ACM6AC_06085) - 1261656..1262048 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  ACM6AC_RS06090 (ACM6AC_06090) pgsA 1262082..1262660 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACM6AC_RS06095 (ACM6AC_06095) cinA 1262883..1264034 (+) 1152 WP_154283930.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  ACM6AC_RS06100 (ACM6AC_06100) recA 1264199..1265242 (+) 1044 WP_416152505.1 recombinase RecA Machinery gene
  ACM6AC_RS06105 (ACM6AC_06105) rny 1265596..1267155 (+) 1560 WP_001050913.1 ribonuclease Y -
  ACM6AC_RS06110 (ACM6AC_06110) - 1267409..1268823 (-) 1415 Protein_1194 transposase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43219.49 Da        Isoelectric Point: 6.1914

>NTDB_id=978686 ACM6AC_RS06095 WP_154283930.1 1262883..1264034(+) (cinA) [Staphylococcus aureus strain AG21-0600]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKISKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=978686 ACM6AC_RS06095 WP_154283930.1 1262883..1264034(+) (cinA) [Staphylococcus aureus strain AG21-0600]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATATCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433


Multiple sequence alignment