Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACM6AC_RS03665 Genome accession   NZ_CP181150
Coordinates   769382..770464 (+) Length   360 a.a.
NCBI ID   WP_154283866.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AG21-0600     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 764382..775464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM6AC_RS03645 (ACM6AC_03645) gdpS 764760..765830 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  ACM6AC_RS03650 (ACM6AC_03650) - 766148..767203 (+) 1056 WP_000258150.1 glycosyltransferase family 4 protein -
  ACM6AC_RS03655 (ACM6AC_03655) - 767367..768008 (-) 642 WP_154283867.1 YigZ family protein -
  ACM6AC_RS03660 (ACM6AC_03660) fakB1 768152..769018 (+) 867 WP_000686344.1 fatty acid kinase binding subunit FakB1 -
  ACM6AC_RS03665 (ACM6AC_03665) comFA 769382..770464 (+) 1083 WP_154283866.1 DEAD/DEAH box helicase Machinery gene
  ACM6AC_RS03670 (ACM6AC_03670) - 770457..771131 (+) 675 WP_111204808.1 ComF family protein -
  ACM6AC_RS03675 (ACM6AC_03675) hpf 771192..771764 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACM6AC_RS03680 (ACM6AC_03680) secA 772179..774710 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  ACM6AC_RS03685 (ACM6AC_03685) - 774752..774850 (+) 99 WP_031789464.1 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41976.50 Da        Isoelectric Point: 9.7563

>NTDB_id=978665 ACM6AC_RS03665 WP_154283866.1 769382..770464(+) (comFA) [Staphylococcus aureus strain AG21-0600]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMLQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPHENVIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINKQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=978665 ACM6AC_RS03665 WP_154283866.1 769382..770464(+) (comFA) [Staphylococcus aureus strain AG21-0600]
ATGGATAATGTAACAAGATATAAAATAACAGAAAGTTCGCAAAGTTCATCACAAGCCTATTATCATCTCTCGTTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGCTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATGTAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTCAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAAACAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTTGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCGCATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(214-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367

Multiple sequence alignment