Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACM6AA_RS07570 Genome accession   NZ_CP181149
Coordinates   1574629..1576308 (-) Length   559 a.a.
NCBI ID   WP_154284343.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AG21-0598     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1569629..1581308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM6AA_RS07550 (ACM6AA_07550) - 1569779..1571053 (-) 1275 WP_154284341.1 dihydrolipoamide acetyltransferase family protein -
  ACM6AA_RS07555 (ACM6AA_07555) - 1571066..1572049 (-) 984 WP_154284342.1 alpha-ketoacid dehydrogenase subunit beta -
  ACM6AA_RS07560 (ACM6AA_07560) - 1572049..1573041 (-) 993 WP_000568355.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  ACM6AA_RS07565 (ACM6AA_07565) lpdA 1573057..1574478 (-) 1422 WP_001291533.1 dihydrolipoyl dehydrogenase -
  ACM6AA_RS07570 (ACM6AA_07570) recN 1574629..1576308 (-) 1680 WP_154284343.1 DNA repair protein RecN Machinery gene
  ACM6AA_RS07575 (ACM6AA_07575) ahrC 1576324..1576776 (-) 453 WP_001124985.1 transcriptional regulator AhrC/ArgR -
  ACM6AA_RS07580 (ACM6AA_07580) - 1577207..1578088 (-) 882 WP_000183376.1 polyprenyl synthetase family protein -
  ACM6AA_RS07585 (ACM6AA_07585) - 1578066..1578296 (-) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  ACM6AA_RS07590 (ACM6AA_07590) xseA 1578289..1579626 (-) 1338 WP_001286928.1 exodeoxyribonuclease VII large subunit -
  ACM6AA_RS07595 (ACM6AA_07595) nusB 1579643..1580032 (-) 390 WP_000087385.1 transcription antitermination factor NusB -
  ACM6AA_RS07600 (ACM6AA_07600) - 1580092..1580454 (-) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64293.90 Da        Isoelectric Point: 4.7316

>NTDB_id=978608 ACM6AA_RS07570 WP_154284343.1 1574629..1576308(-) (recN) [Staphylococcus aureus strain AG21-0598]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKQELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMVNTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRRR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=978608 ACM6AA_RS07570 WP_154284343.1 1574629..1576308(-) (recN) [Staphylococcus aureus strain AG21-0598]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTCAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCATCAAACTTTTCAAAATTATAAAGCCAAAAAGCAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTCCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCGCTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTACTACATTTTAGAAGATGCAAAACATGAGTTATATGATGAAATGGTTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGTAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAGCTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGTTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTAAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGACGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCAAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCATCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATTTCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAGTCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGAGAAAATGCAAGAGAAATGATACAACACAATCAAAGACGTAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.234

100

0.44

Multiple sequence alignment