Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   ACAM21_RS08995 Genome accession   NZ_AP031395
Coordinates   1736563..1737522 (+) Length   319 a.a.
NCBI ID   WP_000777236.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P29     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1731563..1742522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM21_RS08965 (SPNE16P29_17730) - 1731763..1732527 (-) 765 WP_000082879.1 nuclear transport factor 2 family protein -
  ACAM21_RS08970 (SPNE16P29_17740) - 1732531..1732974 (-) 444 WP_000651443.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACAM21_RS08975 (SPNE16P29_17750) - 1733656..1733952 (-) 297 WP_000840136.1 bacteriocin immunity protein -
  ACAM21_RS08980 (SPNE16P29_17760) pepA 1733974..1735038 (-) 1065 WP_000209199.1 glutamyl aminopeptidase -
  ACAM21_RS08985 (SPNE16P29_17770) galE 1735439..1736140 (+) 702 WP_000167851.1 UDP-glucose 4-epimerase GalE -
  ACAM21_RS08990 - 1736156..1736266 (+) 111 WP_001108391.1 hypothetical protein -
  ACAM21_RS08995 (SPNE16P29_17780) ceuB 1736563..1737522 (+) 960 WP_000777236.1 ABC transporter permease Machinery gene
  ACAM21_RS09000 (SPNE16P29_17790) - 1737512..1738468 (+) 957 WP_001193668.1 iron chelate uptake ABC transporter family permease subunit -
  ACAM21_RS09005 (SPNE16P29_17800) - 1738465..1739217 (+) 753 WP_000764306.1 ABC transporter ATP-binding protein -
  ACAM21_RS09010 (SPNE16P29_17810) - 1739313..1740278 (+) 966 WP_000858260.1 siderophore ABC transporter substrate-binding protein -
  ACAM21_RS09015 (SPNE16P29_17820) yidD 1740503..1740745 (-) 243 WP_000821640.1 membrane protein insertion efficiency factor YidD -
  ACAM21_RS09020 (SPNE16P29_17830) - 1740745..1741467 (-) 723 WP_001222228.1 pseudouridine synthase -
  ACAM21_RS09025 (SPNE16P29_17840) scpB 1741454..1742023 (-) 570 WP_000105310.1 SMC-Scp complex subunit ScpB -

Sequence


Protein


Download         Length: 319 a.a.        Molecular weight: 35432.32 Da        Isoelectric Point: 9.7465

>NTDB_id=97834 ACAM21_RS08995 WP_000777236.1 1736563..1737522(+) (ceuB) [Streptococcus pneumoniae strain 16P29]
MKLSHYLIGLLLLLVFLSISIGTSDFSWGKLFDFDQQTWLLFQESRLPRTISILLTASSMSMAGLLMQTITQNQFAAPST
VGTTEAAKLGMVLSLFVFPSASLTQKMLFAFISSIVFTLFFLAFMTIFTVKERWMLPLIGIIYSGIIGSVTEVIAYRFNL
VQSMTAWTQGSFSMIQTHQYEWLFLGLIILITVWKLSQTFTIMNLGKETSESLGISYSLLEKLALFLVALTTSVTMITVG
GLPFLGVIVPNLVRKRYGDNLSQTKLMVALVGANLVLACDILSRVLIRPYELSVSLLLGIIGSLVFILLLWRGGRKDAD

Nucleotide


Download         Length: 960 bp        

>NTDB_id=97834 ACAM21_RS08995 WP_000777236.1 1736563..1737522(+) (ceuB) [Streptococcus pneumoniae strain 16P29]
ATGAAACTTTCTCATTATTTAATTGGCTTACTTCTACTCCTAGTCTTTCTCTCTATTAGCATTGGGACCAGTGATTTTTC
ATGGGGAAAGCTATTTGATTTCGACCAGCAGACCTGGCTCCTCTTTCAAGAGTCCCGTCTCCCAAGAACTATCAGTATTC
TCCTGACTGCCTCTAGTATGAGTATGGCAGGCCTTCTCATGCAGACTATTACCCAAAATCAGTTTGCTGCACCGAGTACA
GTTGGAACGACTGAAGCCGCCAAACTGGGAATGGTGCTGAGCCTTTTTGTCTTTCCATCGGCTAGTCTGACCCAAAAGAT
GCTCTTCGCTTTTATTTCATCCATCGTATTCACCCTCTTCTTCCTAGCCTTTATGACCATTTTTACTGTAAAGGAAAGGT
GGATGTTACCTCTGATTGGGATCATCTATAGCGGGATTATCGGCTCAGTCACAGAAGTTATCGCCTATCGTTTCAATCTG
GTTCAGAGTATGACTGCCTGGACCCAGGGCTCCTTCTCCATGATTCAGACCCATCAGTATGAGTGGCTCTTCTTAGGCCT
CATCATCCTGATAACCGTTTGGAAATTATCCCAAACCTTCACCATCATGAATCTAGGGAAAGAAACCAGCGAGAGTTTGG
GGATTTCCTACTCCCTACTTGAAAAACTGGCCCTCTTTCTGGTGGCGCTAACGACAAGCGTCACCATGATTACCGTGGGT
GGCCTACCATTTCTCGGAGTTATCGTTCCCAATCTTGTTCGCAAGCGCTATGGAGATAATCTAAGTCAAACCAAACTCAT
GGTCGCACTGGTTGGTGCCAATCTAGTTCTGGCTTGCGATATCCTATCCCGAGTTCTGATTAGGCCCTATGAGTTGTCTG
TCAGTCTCTTGCTAGGAATCATCGGTAGTCTCGTCTTTATCCTACTTCTCTGGAGAGGGGGACGAAAAGATGCAGACTAA

Domains


Predicted by InterProScan.

(10-312)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

37.097

97.179

0.361


Multiple sequence alignment