Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   R8619_RS09285 Genome accession   NZ_AP026918
Coordinates   1798393..1799430 (-) Length   345 a.a.
NCBI ID   WP_000727277.1    Uniprot ID   A0A0B7LHQ0
Organism   Streptococcus pneumoniae strain PZ900700009     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1793393..1804430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8619_RS09260 (PC0009_18050) - 1794132..1795463 (-) 1332 WP_000390044.1 hemolysin family protein -
  R8619_RS09265 (PC0009_18060) endA 1795754..1796578 (-) 825 WP_001036785.1 DNA-entry nuclease EndA Machinery gene
  R8619_RS09270 (PC0009_18070) - 1796617..1796805 (-) 189 WP_001036519.1 DNA-directed RNA polymerase subunit beta -
  R8619_RS09275 (PC0009_18080) murA 1796798..1798081 (-) 1284 WP_000358028.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  R8619_RS09280 (PC0009_18090) - 1798105..1798335 (-) 231 WP_000250391.1 DUF1146 family protein -
  R8619_RS09285 (PC0009_18100) sepM 1798393..1799430 (-) 1038 WP_000727277.1 SepM family pheromone-processing serine protease Regulator
  R8619_RS09290 (PC0009_18110) coaD 1799414..1799902 (-) 489 WP_001280746.1 pantetheine-phosphate adenylyltransferase -
  R8619_RS09295 (PC0009_18120) rsmD 1799892..1800431 (-) 540 WP_000691938.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  R8619_RS09300 (PC0009_18130) asnA 1800496..1801488 (-) 993 WP_000747993.1 aspartate--ammonia ligase -
  R8619_RS09305 (PC0009_18140) - 1801601..1802284 (-) 684 WP_001016917.1 Bax inhibitor-1/YccA family protein -
  R8619_RS09310 (PC0009_18150) - 1802340..1803080 (-) 741 WP_000152674.1 RNA methyltransferase -
  R8619_RS09315 (PC0009_18160) - 1803114..1803392 (+) 279 WP_001174613.1 acylphosphatase -
  R8619_RS09320 (PC0009_18170) yidC 1803470..1804396 (+) 927 WP_000835944.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37537.57 Da        Isoelectric Point: 5.0724

>NTDB_id=97822 R8619_RS09285 WP_000727277.1 1798393..1799430(-) (sepM) [Streptococcus pneumoniae strain PZ900700009]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKDIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIGLIDRTEVISNVPISFSTAGIGGPSAGLMFSL
AIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHPDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=97822 R8619_RS09285 WP_000727277.1 1798393..1799430(-) (sepM) [Streptococcus pneumoniae strain PZ900700009]
ATGAAAAAAAAGATTAGATGGCCCTTGTATGTCATTGCGGCCTTGATTGTGACCTTCTTGGCATTTGTGGTGCCTTTGCC
CTACTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCTACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGATATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACAGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGACTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGAAAGATTATCACCTTGGAAAATGGAAAAAATGGGATTGGAATCGGCTTGATTGATCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGCCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTGCTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAACTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0B7LHQ0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.649

99.13

0.591


Multiple sequence alignment