Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   ACM6AQ_RS05975 Genome accession   NZ_CP181136
Coordinates   1229926..1231077 (+) Length   383 a.a.
NCBI ID   WP_072491553.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AG21-0619     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1224926..1236077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM6AQ_RS05950 (ACM6AQ_05950) yfmH 1225756..1227042 (+) 1287 WP_000664773.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  ACM6AQ_RS05955 (ACM6AQ_05955) ymfI 1227042..1227746 (+) 705 WP_000646224.1 elongation factor P 5-aminopentanone reductase -
  ACM6AQ_RS05960 (ACM6AQ_05960) - 1227851..1228678 (+) 828 WP_000214890.1 YmfK family protein -
  ACM6AQ_RS05965 (ACM6AQ_05965) - 1228697..1229089 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  ACM6AQ_RS05970 (ACM6AQ_05970) pgsA 1229123..1229701 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACM6AQ_RS05975 (ACM6AQ_05975) cinA 1229926..1231077 (+) 1152 WP_072491553.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  ACM6AQ_RS05980 (ACM6AQ_05980) recA 1231242..1232285 (+) 1044 WP_072491554.1 recombinase RecA Machinery gene
  ACM6AQ_RS05985 (ACM6AQ_05985) rny 1232639..1234198 (+) 1560 WP_001050913.1 ribonuclease Y -
  ACM6AQ_RS05990 (ACM6AQ_05990) - 1234495..1234710 (-) 216 WP_000026308.1 hypothetical protein -
  ACM6AQ_RS05995 (ACM6AQ_05995) - 1234884..1235681 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43199.65 Da        Isoelectric Point: 6.4461

>NTDB_id=978066 ACM6AQ_RS05975 WP_072491553.1 1229926..1231077(+) (cinA) [Staphylococcus aureus strain AG21-0619]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLELSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAKIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAVSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSGDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=978066 ACM6AQ_RS05975 WP_072491553.1 1229926..1231077(+) (cinA) [Staphylococcus aureus strain AG21-0619]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATTAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCAAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGATCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCTGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGTAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCCGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGGTGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATAACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431


Multiple sequence alignment