Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   ACAM21_RS06025 Genome accession   NZ_AP031395
Coordinates   1159193..1159657 (-) Length   154 a.a.
NCBI ID   WP_001135767.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16P29     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1154193..1164657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM21_RS06005 (SPNE16P29_11750) - 1155144..1156112 (-) 969 WP_000105363.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  ACAM21_RS06010 (SPNE16P29_11760) pdrM 1156266..1157627 (-) 1362 WP_000278537.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  ACAM21_RS06015 (SPNE16P29_11770) - 1157638..1157898 (-) 261 WP_001105925.1 hypothetical protein -
  ACAM21_RS06020 (SPNE16P29_11780) - 1157912..1159180 (-) 1269 WP_000924488.1 dihydroorotase -
  ACAM21_RS06025 (SPNE16P29_11790) mutX 1159193..1159657 (-) 465 WP_001135767.1 8-oxo-dGTP diphosphatase Machinery gene
  ACAM21_RS06030 (SPNE16P29_11800) - 1159667..1160320 (-) 654 WP_000401326.1 uracil-DNA glycosylase -
  ACAM21_RS06035 (SPNE16P29_11810) - 1160458..1161105 (-) 648 WP_001809355.1 hypothetical protein -
  ACAM21_RS06040 (SPNE16P29_11820) - 1161119..1161832 (-) 714 WP_000499437.1 YjjG family noncanonical pyrimidine nucleotidase -
  ACAM21_RS06045 (SPNE16P29_11830) - 1162322..1162429 (-) 108 Protein_1195 hypothetical protein -
  ACAM21_RS06050 - 1162429..1162503 (-) 75 Protein_1196 dihydroxyacetone kinase subunit L -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17826.19 Da        Isoelectric Point: 4.2287

>NTDB_id=97806 ACAM21_RS06025 WP_001135767.1 1159193..1159657(-) (mutX) [Streptococcus pneumoniae strain 16P29]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAAREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGTLEWIPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=97806 ACAM21_RS06025 WP_001135767.1 1159193..1159657(-) (mutX) [Streptococcus pneumoniae strain 16P29]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGGCGCGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGACGCTAGAATGGATTCC
CTATGATGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

98.052

100

0.981

Multiple sequence alignment