Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   R8563_RS08835 Genome accession   NZ_AP026917
Coordinates   1713815..1714741 (-) Length   308 a.a.
NCBI ID   WP_001291293.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700007     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1708815..1719741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8563_RS08810 (PC0007_17310) treR 1709924..1710634 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  R8563_RS08815 (PC0007_17320) - 1710667..1711470 (-) 804 WP_000202630.1 ABC transporter ATP-binding protein -
  R8563_RS08820 (PC0007_17330) - 1711483..1712376 (-) 894 WP_001012092.1 ABC transporter permease -
  R8563_RS08825 (PC0007_17340) - 1712388..1713197 (-) 810 WP_001850051.1 ABC transporter substrate-binding protein -
  R8563_RS08830 - 1713618..1713749 (-) 132 WP_000787593.1 hypothetical protein -
  R8563_RS08835 (PC0007_17350) amiF 1713815..1714741 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  R8563_RS08840 (PC0007_17360) amiE 1714752..1715819 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  R8563_RS08845 (PC0007_17370) amiD 1715828..1716754 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  R8563_RS08850 (PC0007_17380) amiC 1716754..1718250 (-) 1497 WP_000759903.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34796.85 Da        Isoelectric Point: 6.6224

>NTDB_id=97732 R8563_RS08835 WP_001291293.1 1713815..1714741(-) (amiF) [Streptococcus pneumoniae strain PZ900700007]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=97732 R8563_RS08835 WP_001291293.1 1713815..1714741(-) (amiF) [Streptococcus pneumoniae strain PZ900700007]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment