Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AADZ52_RS10850 Genome accession   NZ_CP151430
Coordinates   2171277..2173082 (-) Length   601 a.a.
NCBI ID   WP_097350351.1    Uniprot ID   -
Organism   Listeria welshimeri strain 4-43     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2166277..2178082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ52_RS10830 (AADZ52_10815) isdE 2167207..2168079 (-) 873 WP_185597194.1 heme ABC transporter substrate-binding protein IsdE -
  AADZ52_RS10835 (AADZ52_10820) - 2168166..2169890 (-) 1725 WP_185307355.1 NEAT domain-containing protein -
  AADZ52_RS10840 (AADZ52_10825) isdC 2169903..2170538 (-) 636 WP_213929966.1 heme uptake protein IsdC -
  AADZ52_RS10845 (AADZ52_10830) - 2170732..2170998 (-) 267 WP_185420887.1 DUF3116 family protein -
  AADZ52_RS10850 (AADZ52_10835) pepF 2171277..2173082 (-) 1806 WP_097350351.1 oligoendopeptidase F Regulator
  AADZ52_RS10855 (AADZ52_10840) - 2173155..2174270 (-) 1116 WP_097350352.1 competence protein CoiA -
  AADZ52_RS10860 (AADZ52_10845) mecA 2174396..2175049 (-) 654 WP_011702961.1 adaptor protein MecA -
  AADZ52_RS10865 (AADZ52_10850) spxA 2175271..2175666 (-) 396 WP_003720569.1 transcriptional regulator SpxA -
  AADZ52_RS10870 (AADZ52_10855) - 2175985..2176953 (-) 969 WP_011702962.1 ATP-binding cassette domain-containing protein -
  AADZ52_RS10875 (AADZ52_10860) - 2176950..2178026 (-) 1077 WP_003722316.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68608.80 Da        Isoelectric Point: 4.5491

>NTDB_id=976598 AADZ52_RS10850 WP_097350351.1 2171277..2173082(-) (pepF) [Listeria welshimeri strain 4-43]
MSKTNALPLREEVPEELTWDLTTIFPSDEAFEEAFLDLQKMTEESNQFKGRLAESSQILFEALQFRDKAYDLISNLYVYA
HLKMDQDTANAKYQGLYSRAGSLATKLMSALSYYDPEILAMDESVLKQFLNENKDLQLYAHLLEELNLSRPYILSEKEEA
LLANAGEVLGSSSNTFNTLNNADMKFPSIKDENGEEIEITHGRYGKLLESNDPRVRRDAFFGVYSVYEGLKNTLASTLNG
QVKKSNFYAATRGYKSAREAALSGNHIPETVYDALLNSVNTNANLLHRYVKLRKELLGLDELHMYDLYTPLSDDVNLEFT
YDEAKELVLEALKPLGEEYQSILKEAFDSRWIDVIENKGKRSGAYSSGSYSTSPYILLNWQDNINNVYTLAHELGHSVHS
YYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHAIHQADQNGT
ALTADYLTETYFDINKKYYGEDMVYDAEIGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILLEGQEAVTAYIDFLKAG
SSDYPIEVLKKAGVDMTTPDPVNDALKVFEQRLDELEKLVK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=976598 AADZ52_RS10850 WP_097350351.1 2171277..2173082(-) (pepF) [Listeria welshimeri strain 4-43]
TTGAGTAAAACTAATGCATTACCTTTAAGAGAAGAAGTACCAGAAGAATTAACATGGGATTTAACAACTATTTTTCCGAG
TGATGAGGCTTTTGAAGAAGCTTTTCTTGATTTACAAAAAATGACAGAAGAAAGTAATCAATTTAAAGGTCGTTTAGCTG
AAAGTAGTCAAATTCTTTTTGAGGCACTTCAATTTCGGGATAAAGCTTATGATCTAATTAGTAATTTATATGTTTATGCA
CATTTGAAAATGGACCAAGATACTGCTAATGCAAAATATCAAGGTTTATATAGTCGTGCAGGAAGTTTAGCAACAAAATT
AATGTCGGCATTATCTTATTATGATCCAGAAATTTTAGCTATGGACGAAAGTGTTTTAAAGCAATTTTTAAATGAAAATA
AAGACTTGCAATTATATGCACATTTATTGGAAGAATTGAATCTCAGTCGACCTTATATTTTAAGTGAGAAGGAAGAAGCT
TTATTAGCCAATGCTGGTGAAGTTCTTGGGAGTTCTTCTAACACGTTTAATACGTTAAACAATGCAGATATGAAATTTCC
TTCTATTAAAGATGAGAATGGTGAAGAGATTGAAATTACTCATGGTCGATATGGTAAATTATTAGAGAGTAATGACCCAC
GTGTTCGCCGTGATGCTTTTTTTGGAGTATATTCTGTTTATGAAGGATTAAAGAATACTTTAGCTTCTACTTTAAATGGA
CAAGTGAAAAAATCGAACTTTTATGCAGCTACTAGAGGGTATAAATCTGCTCGTGAAGCAGCACTTTCAGGTAATCATAT
TCCTGAAACTGTATATGATGCCTTACTAAACTCAGTGAACACTAATGCTAATTTACTTCATCGCTATGTGAAATTACGTA
AAGAGCTGTTAGGTTTAGATGAGTTGCATATGTATGATTTGTATACGCCGCTTTCAGATGATGTTAACTTGGAATTCACA
TACGATGAAGCCAAAGAACTGGTTCTTGAAGCGTTGAAGCCACTTGGAGAAGAATATCAATCTATTTTAAAAGAAGCATT
TGATAGTCGTTGGATTGATGTAATAGAAAATAAAGGTAAACGTAGTGGCGCGTATTCGTCTGGTTCTTATAGTACAAGTC
CATATATTTTACTGAATTGGCAAGATAATATTAATAATGTTTACACTCTTGCTCATGAACTTGGACATAGTGTGCATAGT
TATTATACAAGAAAAAATCAGCCTTTCGTTTATGGTGATTATTCTATTTTCTTAGCAGAGGTTGCATCTACGACGAATGA
AAATCTATTGACAGATTACCTTTTGAAAAAGTATGATGATCCAAAAGTCCGTGCCTATTTATTAAATCATTATTTAGACG
GATTTAAAGGGACTGTATTCCGTCAAACGCAATTTGCTGAATTTGAGCATGCTATTCACCAAGCAGATCAAAATGGTACG
GCATTGACTGCTGATTATCTAACAGAGACTTATTTTGATATTAATAAGAAATATTACGGCGAAGATATGGTTTATGATGC
TGAAATCGGTTATGAATGGTCTCGAATTCCACATTTCTATATGAATTATTACGTGTTCCAATATGCGACTGGTTTTTCAG
CAGCTTCTGCATTAAGTGCAAAAATTCTACTTGAAGGACAAGAAGCGGTAACAGCTTATATTGATTTCTTGAAAGCTGGT
AGTTCGGATTATCCTATTGAAGTTCTGAAAAAAGCAGGAGTAGATATGACAACTCCAGACCCAGTAAATGACGCATTAAA
AGTTTTTGAGCAAAGATTAGACGAACTAGAAAAATTAGTTAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.182

98.502

0.504

Multiple sequence alignment