Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AADZ52_RS06530 Genome accession   NZ_CP151430
Coordinates   1287478..1289169 (+) Length   563 a.a.
NCBI ID   WP_213929922.1    Uniprot ID   -
Organism   Listeria welshimeri strain 4-43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1282478..1294169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ52_RS06505 (AADZ52_06495) - 1282628..1283509 (+) 882 WP_185303599.1 polyprenyl synthetase family protein -
  AADZ52_RS06510 (AADZ52_06500) - 1283708..1283908 (+) 201 WP_003719639.1 cold-shock protein -
  AADZ52_RS06515 (AADZ52_06505) dxs 1284075..1285994 (+) 1920 WP_185442116.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AADZ52_RS06520 (AADZ52_06510) - 1285991..1286815 (+) 825 WP_011702179.1 TlyA family RNA methyltransferase -
  AADZ52_RS06525 (AADZ52_06515) argR 1287006..1287455 (+) 450 WP_011702180.1 transcriptional regulator ArgR -
  AADZ52_RS06530 (AADZ52_06520) recN 1287478..1289169 (+) 1692 WP_213929922.1 DNA repair protein RecN Machinery gene
  AADZ52_RS06535 (AADZ52_06525) - 1289299..1290165 (+) 867 WP_097349608.1 phosphate acyltransferase -
  AADZ52_RS06540 (AADZ52_06530) buk 1290302..1291369 (+) 1068 WP_185421576.1 butyrate kinase -
  AADZ52_RS06545 (AADZ52_06535) lpdA 1291383..1292810 (+) 1428 WP_213929923.1 dihydrolipoyl dehydrogenase -
  AADZ52_RS06550 (AADZ52_06540) - 1292835..1293830 (+) 996 WP_011702185.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63501.24 Da        Isoelectric Point: 5.5620

>NTDB_id=976586 AADZ52_RS06530 WP_213929922.1 1287478..1289169(+) (recN) [Listeria welshimeri strain 4-43]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSTDFIRHGEERLELQGLFALAEDNFACRNA
LLENGIDASDNMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEFQTIVREWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYTAIQG
EPGGLEFIGEAMRQMETAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPDELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTNSESHVGHLETKMATLKTELTKQASALTDIRKKAAATLEKQIKQELNQLYMEKAIFSVRFE
SNKTELTESGQDNVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAGKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTILKGDEKVEEISRMIAGIEVTNLTKQHAKEMIQQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=976586 AADZ52_RS06530 WP_213929922.1 1287478..1289169(+) (recN) [Listeria welshimeri strain 4-43]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCACTCTCTTTAACTTTTCAAGAAGGGATGACAGTATT
AACGGGGGAGACCGGCGCAGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGTGGTTCCACTGACT
TTATTCGTCACGGTGAGGAACGCCTAGAACTTCAAGGTCTTTTTGCGTTAGCAGAGGATAATTTTGCTTGCCGTAATGCT
CTTTTAGAAAATGGAATTGATGCTTCAGATAATATGGTCGTTTTAGAACGGAGCTTATTTCGTTCCGGTAAAAATAGTTG
CCGTATTAACGGTAAACTTGTTACTACTGTTCTGCTTCGTCAAATTGGTTCTAAATTAATTGATATCCATAGTCAACATG
AGCATCAAGAATTAATGAATGAGGAATTTCATTTGTCACTACTAGATCGTTTTGCTTCAGACAAAATTAAACCTGCATTA
ACGAAATACCAAACTAATTTCAAAGAATTTCAAACGATTGTAAGAGAGTGGCAAAACTGGACAAAAAACGAGCGAGAACT
TGCACAGCGACTAGATATGCTGCGTTTTCAACAGCAAGAAATCGAAAACGCTAATTTACAAGCAGGGGAAGAAGATCGTT
TATTAGAGCAAAAAAATATTTTAGCTAATTTTGAAAAGTTGAATGAAAACTTACAAGGTGCATACACGGCTATCCAAGGA
GAACCCGGCGGACTTGAATTCATTGGGGAAGCAATGCGCCAAATGGAGACAGCCGCGAGTATTCATACGGATTATAAAGC
GGTTAGTGAAGCGATTTCCTCCAGTTACTATATGTTAGAAGATAGCATGAGCCAAATTAGACAATCGCTTGATCAGCTTG
AATTCCAACCAGACGAACTCAATCAGATTGAATCGCGCTTGAATGACTTAAATCAATTGAAGCGGAAGTATGGCAAAACT
ATTGAAGATATCATCCAGTACGAGCAAGAAATTAGCAGCGAAATGGAAAAATTAACTAATAGTGAGTCACATGTGGGTCA
TTTAGAAACAAAAATGGCCACATTAAAAACCGAGCTTACAAAACAAGCAAGTGCATTAACGGATATCCGTAAGAAAGCCG
CGGCTACATTGGAAAAACAAATTAAACAAGAATTAAATCAACTTTATATGGAAAAAGCTATTTTTAGTGTCCGATTTGAA
TCCAATAAAACAGAGTTGACAGAATCTGGACAAGATAATGTGGTTTTCTACATGTCAACCAATCCTGGAGAACCATTAAA
ACCTCTCGCAAAAATCGCTTCAGGCGGTGAACTTTCACGAATGATGTTGGCGCTAAAAACTATTTTTTCTAGACATCAAG
GAATTACATCCATCATTTTTGATGAAGTGGATACGGGTGTAAGTGGCCGTGTAGGGCAAGCTATCGCGGGAAAAATCTAT
GCCGTCTCAGTTGGCTCGCAAGTTCTTTGTATCAGTCATTTACCTCAAGTGGCTGCTATGGCAAACCATCATTACTACAT
CACAAAAAAAGTACAAAATAAACGTACAACCACTTCAGTAACAATTCTAAAAGGCGATGAAAAAGTGGAAGAAATTAGCC
GAATGATTGCAGGAATTGAAGTGACTAATTTAACAAAACAACATGCGAAAGAAATGATTCAACAAGCAGAAAAAGTAAAA
CAAACTTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.562

100

0.528

Multiple sequence alignment