Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AADZ52_RS01075 Genome accession   NZ_CP151430
Coordinates   217074..218447 (+) Length   457 a.a.
NCBI ID   WP_213929558.1    Uniprot ID   -
Organism   Listeria welshimeri strain 4-43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 212074..223447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ52_RS01055 (AADZ52_01055) - 212419..212877 (+) 459 WP_003723894.1 CtsR family transcriptional regulator -
  AADZ52_RS01060 (AADZ52_01060) - 212890..213408 (+) 519 WP_097350908.1 UvrB/UvrC motif-containing protein -
  AADZ52_RS01065 (AADZ52_01065) - 213405..214427 (+) 1023 WP_185305836.1 protein arginine kinase -
  AADZ52_RS01070 (AADZ52_01070) - 214456..216918 (+) 2463 WP_011701059.1 ATP-dependent Clp protease ATP-binding subunit -
  AADZ52_RS01075 (AADZ52_01075) radA 217074..218447 (+) 1374 WP_213929558.1 DNA repair protein RadA Machinery gene
  AADZ52_RS01080 (AADZ52_01080) - 218581..219654 (+) 1074 WP_011701061.1 PIN/TRAM domain-containing protein -
  AADZ52_RS01085 (AADZ52_01085) ispD 219674..220366 (+) 693 WP_185473829.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AADZ52_RS01090 (AADZ52_01090) gltX 220381..221856 (+) 1476 WP_011701063.1 glutamate--tRNA ligase -
  AADZ52_RS01095 (AADZ52_01095) epsC 222254..222868 (+) 615 WP_011701064.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49987.64 Da        Isoelectric Point: 7.3272

>NTDB_id=976577 AADZ52_RS01075 WP_213929558.1 217074..218447(+) (radA) [Listeria welshimeri strain 4-43]
MAKAKRTTKFVCQACGYESPKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASEEEARVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHVYRILRAVKNRFGSTNEMGIFEMRDIGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=976577 AADZ52_RS01075 WP_213929558.1 217074..218447(+) (radA) [Listeria welshimeri strain 4-43]
ATGGCTAAGGCAAAAAGGACGACCAAATTTGTATGTCAGGCATGTGGATATGAATCGCCAAAATGGATGGGTAAATGTCC
GAATTGCAACGAGTGGAATCAGATGGTGGAAGCATTAGAACCATCGAAAAAATCGCGCTCAGCTTTTAATCATACAGGAG
AACCATCAAAAGCAACACCGATTACTCAAATTGCGAGTGAAGAAGAGGCAAGAGTAGAAACAAATATGCCTGAATTAAAT
AGAGTTCTGGGTGGCGGTGTGGTTCCTGGTTCCATGGTTCTTGTTGGTGGAGATCCAGGTATCGGTAAATCAACGCTTTT
ACTTCAAGTGTCAGCACAACTTACACTTACTAATAAAAAAGTTCTCTATATTTCTGGGGAAGAATCAATTAAGCAAACAA
AACTTCGAGCAGAACGTTTGCAAGTTTCAGGTGATAATTTGTATGTTTATGCAGAAACAAATTTAGAAGCAGTTCAAGAA
ACAATTGATTTTGTAAAGCCTGATTTTGTAGTAATTGATTCTATTCAAACAGTTTATCATCCAGATGTAACGAGCGCTGC
GGGAAGCGTGTCGCAAGTTAGAGAATGTACAGCAGCTTTAATGCGAATTGCTAAAATGCAAAATATCGCTATTTTTATTG
TTGGTCATGTGACGAAGGAAGGTGCAATTGCAGGTCCTCGTTTACTTGAGCATATGGTAGATACAGTGCTTTATTTTGAA
GGAGAGCGTCATCACGTATACCGAATTTTACGCGCAGTGAAAAACCGTTTTGGCTCAACAAATGAAATGGGGATTTTTGA
AATGCGTGATATTGGTCTTGTAGAAGTCGCCAATCCATCGGAGGTTTTCTTAGAGGAGCGTTTAGAAGGAGCTTCGGGTT
CAACCGTTGTAGCTTCAATGGAAGGAACGCGACCAGTGTTAGTAGAAATTCAAGCACTTGTATCGCCAACTATGTTTGGA
AATGCGAAAAGAATGGCCACCGGGATTGATTATAACAAGGTATCATTGATTATGGCTGTTTTAGAAAAAAGAGTAGGACT
CATGTTACAAAACCAAGATGCATATTTGAAAGCGGCTGGTGGGGTTAAGTTAGACGAACCGGCAGTTGATTTAGCAGTTG
CTGTTAGCGTAGCTTCCAGTTATCGTGATAAGCCGACGAGGAGTACGGATTGTTTTATTGGTGAGCTTGGTTTAACAGGA
GAAATTAGACGTGTGGCAAGAATTGAGCAACGTGTACAAGAAGCCGCAAAACTTGGCTTTAAACGAATTTTTATTCCAAA
AAATAATGAAGGTACTTGGAAAATACCAAAAGACGTGCAAGTGGTTGGTGTGGAAACGATTGGAGAAGCATTGAAGAAGG
CTTTACCAGATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.86

99.781

0.687
  radA Streptococcus pneumoniae Rx1

65.487

98.906

0.648
  radA Streptococcus pneumoniae D39

65.487

98.906

0.648
  radA Streptococcus pneumoniae R6

65.487

98.906

0.648
  radA Streptococcus pneumoniae TIGR4

65.487

98.906

0.648
  radA Streptococcus mitis NCTC 12261

65.487

98.906

0.648
  radA Streptococcus mitis SK321

65.265

98.906

0.646

Multiple sequence alignment