Detailed information NTG0976526

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACM59W_RS07015
• Genome accession: NZ_CP181089
• Coordinates: 1475454..1476458 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain ST175LTH
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1470454..1481458

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM59W_RS06985 (ACM59W_06985)	fghA	1470546..1471397 (+)	852	WP_003098562.1	S-formylglutathione hydrolase	-
ACM59W_RS06990 (ACM59W_06990)	ispF	1471468..1471941 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACM59W_RS06995 (ACM59W_06995)	truD	1471938..1473005 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
ACM59W_RS07000 (ACM59W_07000)	surE	1472993..1473742 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACM59W_RS07005 (ACM59W_07005)	-	1473775..1474410 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACM59W_RS07010 (ACM59W_07010)	-	1474456..1475349 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACM59W_RS07015 (ACM59W_07015)	rpoS	1475454..1476458 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACM59W_RS07020 (ACM59W_07020)	fdxA	1476885..1477208 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACM59W_RS07025 (ACM59W_07025)	mutS	1477275..1479842 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACM59W_RS07030 (ACM59W_07030)	-	1479968..1480975 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=976526 ACM59W_RS07015 WP_003113871.1 1475454..1476458(+) (rpoS) [Pseudomonas aeruginosa strain ST175LTH]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=976526 ACM59W_RS07015 WP_003113871.1 1475454..1476458(+) (rpoS) [Pseudomonas aeruginosa strain ST175LTH]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653