Detailed information NTG0976494

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: RBI96_RS29620
• Genome accession: NZ_CP181075
• Coordinates: 6349445..6350449 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain LACPHL-BACT-2023-00013
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6344445..6355449

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RBI96_RS29590 (RBI96_029590)	fghA	6344537..6345388 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
RBI96_RS29595 (RBI96_029595)	ispF	6345459..6345932 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
RBI96_RS29600 (RBI96_029600)	truD	6345929..6346996 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
RBI96_RS29605 (RBI96_029605)	surE	6346984..6347733 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
RBI96_RS29610 (RBI96_029610)	-	6347766..6348401 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
RBI96_RS29615 (RBI96_029615)	-	6348447..6349340 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
RBI96_RS29620 (RBI96_029620)	rpoS	6349445..6350449 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
RBI96_RS29625 (RBI96_029625)	fdxA	6350876..6351199 (-)	324	WP_003092272.1	ferredoxin FdxA	-
RBI96_RS29630 (RBI96_029630)	mutS	6351266..6353833 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
RBI96_RS29635 (RBI96_029635)	-	6353959..6354966 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=976494 RBI96_RS29620 WP_003113871.1 6349445..6350449(+) (rpoS) [Pseudomonas aeruginosa strain LACPHL-BACT-2023-00013]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=976494 RBI96_RS29620 WP_003113871.1 6349445..6350449(+) (rpoS) [Pseudomonas aeruginosa strain LACPHL-BACT-2023-00013]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653