Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   WMW89_RS02950 Genome accession   NZ_CP151421
Coordinates   580614..582287 (+) Length   557 a.a.
NCBI ID   WP_002387037.1    Uniprot ID   -
Organism   Enterococcus faecalis strain HMRC07H23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 575614..587287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMW89_RS02920 (WMW89_02915) - 575865..576710 (+) 846 WP_002355876.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  WMW89_RS02925 (WMW89_02920) xseA 576720..578066 (+) 1347 WP_002355877.1 exodeoxyribonuclease VII large subunit -
  WMW89_RS02930 (WMW89_02925) - 578068..578298 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  WMW89_RS02935 (WMW89_02930) - 578298..579179 (+) 882 WP_002355879.1 polyprenyl synthetase family protein -
  WMW89_RS02940 (WMW89_02935) - 579193..580008 (+) 816 WP_033593444.1 TlyA family RNA methyltransferase -
  WMW89_RS02945 (WMW89_02940) - 580147..580596 (+) 450 WP_002355883.1 arginine repressor -
  WMW89_RS02950 (WMW89_02945) recN 580614..582287 (+) 1674 WP_002387037.1 DNA repair protein RecN Machinery gene
  WMW89_RS02955 (WMW89_02950) - 582378..582488 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  WMW89_RS02960 (WMW89_02955) - 582556..583521 (-) 966 WP_002383400.1 magnesium transporter CorA family protein -
  WMW89_RS02965 (WMW89_02960) - 583766..584158 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  WMW89_RS02970 (WMW89_02965) mraZ 584392..584877 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  WMW89_RS02975 (WMW89_02970) rsmH 584892..585848 (+) 957 WP_010820726.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  WMW89_RS02980 (WMW89_02975) ftsL 585865..586272 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62631.04 Da        Isoelectric Point: 4.5772

>NTDB_id=976460 WMW89_RS02950 WP_002387037.1 580614..582287(+) (recN) [Enterococcus faecalis strain HMRC07H23]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKKLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDSEYKTLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGVEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=976460 WMW89_RS02950 WP_002387037.1 580614..582287(+) (recN) [Enterococcus faecalis strain HMRC07H23]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGAAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTGGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATTCAGAATATAAAAC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCCAGTGGAGATCTTTCTAGGTTGATTGATGGCTTAG
AACTAGACGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCCGCTCATCAACAAGCATTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACGGAATTTGAAGTCCGCTTTACA
GAACTTGAGCATTTACAAGAAAATGGCTTAGACGGAGTAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGCTAGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTTAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGTCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.168

100

0.496

Multiple sequence alignment