Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AADV58_RS09490 Genome accession   NZ_CP151406
Coordinates   1995940..1997298 (+) Length   452 a.a.
NCBI ID   WP_028995644.1    Uniprot ID   -
Organism   Azonexus hydrophilus strain NCP973     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1990940..2002298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADV58_RS09470 (AADV58_09470) - 1992123..1992488 (-) 366 WP_341743018.1 cupin domain-containing protein -
  AADV58_RS09475 (AADV58_09475) lplT 1992491..1993753 (-) 1263 WP_341743019.1 lysophospholipid transporter LplT -
  AADV58_RS09480 (AADV58_09480) - 1993946..1994848 (+) 903 WP_341743020.1 LysR family transcriptional regulator -
  AADV58_RS09485 (AADV58_09485) alr 1994845..1995939 (+) 1095 WP_341743021.1 alanine racemase -
  AADV58_RS09490 (AADV58_09490) radA 1995940..1997298 (+) 1359 WP_028995644.1 DNA repair protein RadA Machinery gene
  AADV58_RS09495 (AADV58_09495) - 1997295..1999775 (+) 2481 WP_341743022.1 FtsX-like permease family protein -
  AADV58_RS09500 (AADV58_09500) - 1999763..2000170 (-) 408 WP_341743023.1 ATP-binding protein -
  AADV58_RS09505 (AADV58_09505) - 2000224..2000652 (+) 429 WP_341743024.1 FecR domain-containing protein -
  AADV58_RS09510 (AADV58_09510) - 2000645..2001229 (+) 585 WP_298393475.1 OmpA family protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48089.51 Da        Isoelectric Point: 7.4419

>NTDB_id=976450 AADV58_RS09490 WP_028995644.1 1995940..1997298(+) (radA) [Azonexus hydrophilus strain NCP973]
MAKAKTLYSCTECGATSPKWQGQCPGCNAWNTLVETIAEKPGNHRFESLAPAAKLQNLADIEAREADRIATGIGEFDRAL
GGGLVGGGVVLIGGDPGIGKSTLLLQALAHLAQAHKVLYVTGEESGQQVALRARRLNLDTGNLPLMAEINLERILATLQA
EQPQVAVIDSIQTLWSDQLSSAPGSVAQVRECAAQLTRLAKQAGITVILVGHVTKEGALAGPRVLEHVVDTVLYFEGDTH
SSFRLVRAVKNRFGAVNELGVFAMTETGLKGVSNPSAMFLSQHGQEVAGSCVMVTQEGTRPLLVEIQALVDTAHGNPRRL
TVGLDAQRLAMLLAVLHRHAGIVCFDQDVFVNAVGGVKIGEPAGDLAVIMAITSSLKNKALPEKLIVFGEVGLAGEIRPA
PRGQERLKEAAKLGFTRALIPEANRPRQAIPGMEVIAVKRVEEAVQRIRELQ

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=976450 AADV58_RS09490 WP_028995644.1 1995940..1997298(+) (radA) [Azonexus hydrophilus strain NCP973]
ATGGCCAAAGCCAAGACGCTCTACAGTTGTACCGAATGCGGGGCGACCAGCCCCAAGTGGCAGGGCCAGTGCCCCGGCTG
CAATGCCTGGAACACGCTGGTCGAGACGATTGCCGAAAAACCCGGCAACCACCGTTTCGAGTCGCTGGCCCCGGCGGCGA
AGCTGCAGAACCTGGCCGACATCGAAGCGCGTGAGGCCGACCGCATCGCGACCGGCATCGGCGAGTTCGATCGCGCGCTC
GGCGGGGGTCTGGTCGGCGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGAGTACCTTGCTGCTGCAGGC
GCTGGCGCATCTGGCCCAGGCGCACAAGGTGCTTTACGTGACCGGCGAGGAATCCGGGCAGCAGGTGGCGTTGCGCGCCC
GCCGGCTCAATCTCGATACCGGCAATCTGCCGCTGATGGCCGAGATCAACCTCGAGCGCATTCTGGCGACGCTGCAGGCC
GAGCAACCGCAGGTGGCGGTGATCGACTCGATCCAGACGCTGTGGTCCGATCAGTTGTCGAGTGCGCCGGGGTCGGTCGC
CCAGGTGCGCGAATGCGCGGCGCAACTGACGCGCCTGGCCAAGCAGGCCGGCATCACCGTGATCCTGGTCGGCCACGTGA
CTAAGGAGGGCGCGCTGGCCGGGCCGCGCGTGCTCGAACACGTGGTTGATACCGTGCTCTATTTCGAGGGCGACACGCAT
TCCAGTTTCCGCCTGGTGCGCGCGGTCAAGAACCGTTTCGGCGCGGTCAACGAACTTGGCGTCTTCGCCATGACCGAGAC
CGGCCTCAAGGGGGTCAGCAATCCGTCGGCGATGTTCCTGTCGCAGCACGGCCAGGAAGTCGCCGGGTCGTGCGTGATGG
TGACGCAGGAGGGAACGCGGCCGCTGCTGGTGGAAATCCAGGCGCTGGTCGATACCGCGCATGGTAACCCGCGCCGGCTG
ACGGTGGGGCTGGACGCGCAGCGTCTGGCCATGCTGCTGGCGGTGTTGCACCGCCACGCCGGCATCGTCTGCTTCGATCA
GGACGTCTTCGTCAATGCCGTCGGCGGGGTCAAGATCGGCGAACCGGCAGGCGATCTGGCAGTCATTATGGCAATTACTT
CTTCATTGAAAAACAAGGCATTGCCAGAGAAACTTATAGTGTTTGGTGAAGTTGGTCTGGCCGGTGAAATCCGGCCCGCG
CCACGCGGTCAGGAGCGCCTGAAGGAAGCGGCCAAGCTCGGTTTCACGCGGGCGCTGATTCCTGAAGCCAACCGGCCGCG
CCAGGCCATTCCCGGCATGGAGGTGATCGCCGTCAAGCGCGTCGAGGAAGCCGTCCAGCGTATCCGGGAGCTGCAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.552

100

0.507
  radA Streptococcus mitis SK321

48.451

100

0.485
  radA Streptococcus pneumoniae D39

47.894

99.779

0.478
  radA Streptococcus pneumoniae TIGR4

47.894

99.779

0.478
  radA Streptococcus pneumoniae R6

47.894

99.779

0.478
  radA Streptococcus pneumoniae Rx1

47.894

99.779

0.478
  radA Streptococcus mitis NCTC 12261

47.672

99.779

0.476

Multiple sequence alignment