Detailed information NTG0976347

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACNFID_RS05040
• Genome accession: NZ_CP180702
• Coordinates: 1039408..1040400 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FREC5
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1034408..1045400

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNFID_RS05010	ispD	1034469..1035179 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACNFID_RS05015	ispF	1035179..1035658 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACNFID_RS05020	truD	1035655..1036704 (+)	1050	WP_000568956.1	tRNA pseudouridine(13) synthase TruD	-
ACNFID_RS05025	surE	1036685..1037446 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACNFID_RS05030	pcm	1037440..1038066 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACNFID_RS05035	nlpD	1038251..1039345 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACNFID_RS05040	rpoS	1039408..1040400 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACNFID_RS05045	-	1040521..1040928 (-)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
ACNFID_RS05050	-	1041075..1041668 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
ACNFID_RS05055	-	1041668..1043131 (+)	1464	WP_416045055.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
ACNFID_RS05060	-	1043106..1043342 (+)	237	WP_000562990.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
ACNFID_RS05065	ygbN	1043382..1044746 (-)	1365	WP_000104428.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=976347 ACNFID_RS05040 WP_000081550.1 1039408..1040400(+) (rpoS) [Escherichia coli strain FREC5]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=976347 ACNFID_RS05040 WP_000081550.1 1039408..1040400(+) (rpoS) [Escherichia coli strain FREC5]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715