Detailed information NTG0976268

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACM3FI_RS05170
• Genome accession: NZ_CP180700
• Coordinates: 1068465..1069457 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CUPS05
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1063465..1074457

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM3FI_RS05140 (ACM3FI_05140)	ispD	1063526..1064236 (+)	711	WP_121835600.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACM3FI_RS05145 (ACM3FI_05145)	ispF	1064236..1064715 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACM3FI_RS05150 (ACM3FI_05150)	truD	1064712..1065761 (+)	1050	WP_157700704.1	tRNA pseudouridine(13) synthase TruD	-
ACM3FI_RS05155 (ACM3FI_05155)	surE	1065742..1066503 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACM3FI_RS05160 (ACM3FI_05160)	pcm	1066497..1067123 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACM3FI_RS05165 (ACM3FI_05165)	nlpD	1067308..1068402 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACM3FI_RS05170 (ACM3FI_05170)	rpoS	1068465..1069457 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACM3FI_RS05175 (ACM3FI_05175)	ygbN	1069551..1070915 (-)	1365	WP_000104459.1	GntP family transporter	-
ACM3FI_RS05180 (ACM3FI_05180)	ygbM	1071004..1071780 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
ACM3FI_RS05185 (ACM3FI_05185)	ygbL	1071785..1072423 (-)	639	WP_001278994.1	aldolase	-
ACM3FI_RS05190 (ACM3FI_05190)	otnK	1072420..1073682 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=976268 ACM3FI_RS05170 WP_000081550.1 1068465..1069457(+) (rpoS) [Escherichia coli strain CUPS05]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=976268 ACM3FI_RS05170 WP_000081550.1 1068465..1069457(+) (rpoS) [Escherichia coli strain CUPS05]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715