Detailed information NTG0976232

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACM3FK_RS19840
• Genome accession: NZ_CP180694
• Coordinates: 4049031..4050023 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CUPS04
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4044031..4055023

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM3FK_RS19810 (ACM3FK_19810)	ispD	4044092..4044802 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACM3FK_RS19815 (ACM3FK_19815)	ispF	4044802..4045281 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACM3FK_RS19820 (ACM3FK_19820)	truD	4045278..4046327 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACM3FK_RS19825 (ACM3FK_19825)	surE	4046308..4047069 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACM3FK_RS19830 (ACM3FK_19830)	pcm	4047063..4047689 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACM3FK_RS19835 (ACM3FK_19835)	nlpD	4047874..4048968 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACM3FK_RS19840 (ACM3FK_19840)	rpoS	4049031..4050023 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACM3FK_RS19845 (ACM3FK_19845)	ygbN	4050117..4051481 (-)	1365	WP_021547117.1	GntP family transporter	-
ACM3FK_RS19850 (ACM3FK_19850)	ygbM	4051570..4052346 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ACM3FK_RS19855 (ACM3FK_19855)	ygbL	4052351..4052989 (-)	639	WP_001278994.1	aldolase	-
ACM3FK_RS19860 (ACM3FK_19860)	otnK	4052986..4054248 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=976232 ACM3FK_RS19840 WP_000081550.1 4049031..4050023(+) (rpoS) [Escherichia coli strain CUPS04]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=976232 ACM3FK_RS19840 WP_000081550.1 4049031..4050023(+) (rpoS) [Escherichia coli strain CUPS04]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715