Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACM3FH_RS22885 Genome accession   NZ_CP180690
Coordinates   4690636..4691628 (-) Length   330 a.a.
NCBI ID   WP_072183850.1    Uniprot ID   -
Organism   Escherichia coli strain CUPS03     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4685636..4696628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM3FH_RS22875 (ACM3FH_22875) yieP 4688528..4689220 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  ACM3FH_RS22880 (ACM3FH_22880) mdtD 4689243..4690670 (+) 1428 WP_001280858.1 multidrug transporter subunit MdtD -
  ACM3FH_RS22885 (ACM3FH_22885) cytR 4690636..4691628 (-) 993 WP_072183850.1 ribose operon transcriptional repressor RbsR Regulator
  ACM3FH_RS22890 (ACM3FH_22890) rbsK 4691632..4692561 (-) 930 WP_001300603.1 ribokinase -
  ACM3FH_RS22895 (ACM3FH_22895) rbsB 4692687..4693577 (-) 891 WP_001333816.1 ribose ABC transporter substrate-binding protein RbsB -
  ACM3FH_RS22900 (ACM3FH_22900) rbsC 4693602..4694567 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ACM3FH_RS22905 (ACM3FH_22905) rbsA 4694572..4696077 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  ACM3FH_RS22910 (ACM3FH_22910) rbsD 4696085..4696504 (-) 420 WP_001301979.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36596.93 Da        Isoelectric Point: 5.2141

>NTDB_id=976160 ACM3FH_RS22885 WP_072183850.1 4690636..4691628(-) (cytR) [Escherichia coli strain CUPS03]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELLVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=976160 ACM3FH_RS22885 WP_072183850.1 4690636..4691628(-) (cytR) [Escherichia coli strain CUPS03]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACTGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364