Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinI   Type   Regulator
Locus tag   AADV39_RS11675 Genome accession   NZ_CP151288
Coordinates   2435611..2435784 (+) Length   57 a.a.
NCBI ID   WP_032874029.1    Uniprot ID   -
Organism   Bacillus velezensis strain M4019     
Function   inhibit the expression of sinR (predicted from homology)   
Competence regulation

Genomic Context

Location: 2430611..2440784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADV39_RS11660 gcvT 2431425..2432525 (-) 1101 WP_032874033.1 glycine cleavage system aminomethyltransferase GcvT -
  AADV39_RS11665 - 2432948..2434618 (+) 1671 WP_032874031.1 DEAD/DEAH box helicase -
  AADV39_RS11670 - 2434640..2435434 (+) 795 WP_007612541.1 YqhG family protein -
  AADV39_RS11675 sinI 2435611..2435784 (+) 174 WP_032874029.1 anti-repressor SinI Regulator
  AADV39_RS11680 sinR 2435818..2436153 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AADV39_RS11685 tasA 2436201..2436986 (-) 786 WP_032874027.1 biofilm matrix protein TasA -
  AADV39_RS11690 sipW 2437051..2437635 (-) 585 WP_032874025.1 signal peptidase I SipW -
  AADV39_RS11695 tapA 2437607..2438278 (-) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  AADV39_RS11700 - 2438537..2438866 (+) 330 WP_032874021.1 DUF3889 domain-containing protein -
  AADV39_RS11705 - 2438907..2439086 (-) 180 WP_022552966.1 YqzE family protein -
  AADV39_RS11710 comGG 2439143..2439520 (-) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  AADV39_RS11715 comGF 2439521..2439985 (-) 465 WP_223813077.1 competence type IV pilus minor pilin ComGF -
  AADV39_RS11720 comGE 2439930..2440244 (-) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  AADV39_RS11725 comGD 2440228..2440665 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene

Sequence

Protein


Download         Length: 57 a.a.        Molecular weight: 6658.66 Da        Isoelectric Point: 9.8168

>NTDB_id=976126 AADV39_RS11675 WP_032874029.1 2435611..2435784(+) (sinI) [Bacillus velezensis strain M4019]
MKNAKMEFSQLDKEWVELILEAQKANISLEEIRKYLLSNKKSSQHVQAARSHTVNPF

Nucleotide


Download         Length: 174 bp        

>NTDB_id=976126 AADV39_RS11675 WP_032874029.1 2435611..2435784(+) (sinI) [Bacillus velezensis strain M4019]
ATGAAAAATGCAAAAATGGAATTTTCGCAATTAGATAAGGAATGGGTTGAGCTGATATTAGAAGCCCAAAAAGCAAATAT
CAGCCTAGAAGAAATACGCAAATACCTGCTTTCGAATAAAAAGTCTTCTCAACATGTCCAGGCAGCCAGAAGTCATACCG
TAAATCCTTTCTGA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(11-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinI Bacillus subtilis subsp. subtilis str. 168

71.93

100

0.719

Multiple sequence alignment