Detailed information NTG0976105

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACM3FH_RS05110
• Genome accession: NZ_CP180690
• Coordinates: 1055936..1056928 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CUPS03
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1050936..1061928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACM3FH_RS05080 (ACM3FH_05080)	ispD	1050997..1051707 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACM3FH_RS05085 (ACM3FH_05085)	ispF	1051707..1052186 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACM3FH_RS05090 (ACM3FH_05090)	truD	1052183..1053232 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACM3FH_RS05095 (ACM3FH_05095)	surE	1053213..1053974 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACM3FH_RS05100 (ACM3FH_05100)	pcm	1053968..1054594 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACM3FH_RS05105 (ACM3FH_05105)	nlpD	1054779..1055873 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACM3FH_RS05110 (ACM3FH_05110)	rpoS	1055936..1056928 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACM3FH_RS05115 (ACM3FH_05115)	ygbN	1057022..1058386 (-)	1365	WP_000104441.1	GntP family transporter	-
ACM3FH_RS05120 (ACM3FH_05120)	ygbM	1058475..1059251 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACM3FH_RS05125 (ACM3FH_05125)	ygbL	1059256..1059894 (-)	639	WP_001278994.1	aldolase	-
ACM3FH_RS05130 (ACM3FH_05130)	otnK	1059891..1061152 (-)	1262	Protein_1004	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=976105 ACM3FH_RS05110 WP_000081550.1 1055936..1056928(+) (rpoS) [Escherichia coli strain CUPS03]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=976105 ACM3FH_RS05110 WP_000081550.1 1055936..1056928(+) (rpoS) [Escherichia coli strain CUPS03]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715