Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WMB06_RS16175 Genome accession   NZ_CP151275
Coordinates   3532201..3533574 (-) Length   457 a.a.
NCBI ID   WP_341675551.1    Uniprot ID   -
Organism   Niveibacterium sp. SC-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3527201..3538574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMB06_RS16150 (WMB06_16150) - 3527234..3527638 (+) 405 WP_341675546.1 DoxX family protein -
  WMB06_RS16155 (WMB06_16155) - 3527677..3528282 (-) 606 WP_341675547.1 HAD family phosphatase -
  WMB06_RS16160 (WMB06_16160) - 3528266..3529453 (+) 1188 WP_341675548.1 hypothetical protein -
  WMB06_RS16165 (WMB06_16165) - 3529526..3531256 (-) 1731 WP_341675549.1 diguanylate cyclase -
  WMB06_RS16170 (WMB06_16170) - 3531372..3532196 (-) 825 WP_341675550.1 lysophospholipase -
  WMB06_RS16175 (WMB06_16175) radA 3532201..3533574 (-) 1374 WP_341675551.1 DNA repair protein RadA Machinery gene
  WMB06_RS16180 (WMB06_16180) alr 3533638..3534708 (-) 1071 WP_341675552.1 alanine racemase -
  WMB06_RS16185 (WMB06_16185) - 3534701..3535627 (-) 927 WP_341675553.1 LysR family transcriptional regulator -
  WMB06_RS16190 (WMB06_16190) lplT 3535839..3537089 (+) 1251 WP_341675554.1 lysophospholipid transporter LplT -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48450.65 Da        Isoelectric Point: 7.3141

>NTDB_id=976056 WMB06_RS16175 WP_341675551.1 3532201..3533574(-) (radA) [Niveibacterium sp. SC-1]
MAKAKTVYQCSQCGATAPRWQGQCPGCGQWNTLVETIPAPETPANSRFAALAGETAKLQKLSEIQPAEHERMSTGIEEFD
RVLGGGLVSGGVVLIGGDPGIGKSTLLLQALAGMGGGSRAIYVSGEESGEQVALRARRLSVDGGALDLLAEINLERILET
LRTQRPRLAVIDSIQTVFSEALNSAPGSVAQVRECAAQLTRFAKQSGCALVMVGHVTKDGTLAGPRVLEHIVDTVLYFEG
DTQSSFRLVRAFKNRFGAVNELGVFAMTDKGLRGVSNPSAIFLSQHDQDVAGACVLVTQEGTRPLLVEVQALVDPAHAPS
PRRLSVGLEQNRLAMLLAVLHRHAGLVCADQDVFVNAVGGVRINEPAADLAVCLAIVSSLRNKPLRRDIAVFGEVGLAGE
IRPAPRGQERLKEAAKLGFRYALVPKANLPKQGVAGIEVIGVDRIDEALSKARELEA

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=976056 WMB06_RS16175 WP_341675551.1 3532201..3533574(-) (radA) [Niveibacterium sp. SC-1]
GTGGCCAAGGCCAAGACGGTCTATCAATGTTCGCAATGCGGCGCGACGGCGCCGCGCTGGCAAGGGCAGTGCCCCGGCTG
TGGCCAGTGGAATACGCTGGTCGAGACCATTCCCGCGCCCGAGACGCCGGCCAACAGCCGTTTTGCCGCGCTCGCCGGCG
AGACCGCGAAGCTGCAGAAGCTCTCGGAGATCCAGCCCGCCGAGCATGAGCGCATGTCCACCGGCATCGAGGAATTCGAC
CGAGTGCTGGGCGGCGGTCTCGTTTCCGGCGGGGTGGTCCTGATCGGGGGTGATCCCGGCATCGGCAAGTCCACGCTCTT
GCTGCAGGCGCTCGCCGGGATGGGCGGCGGTTCCCGGGCGATCTACGTGAGCGGCGAAGAGTCGGGCGAGCAAGTTGCGC
TGCGCGCGCGGCGCCTTTCAGTCGATGGCGGCGCGTTGGATCTGCTTGCCGAAATCAATCTGGAGCGCATCCTCGAAACC
CTGCGCACCCAGCGCCCGCGGCTCGCGGTGATCGACTCGATCCAGACCGTGTTCTCCGAGGCGCTCAACTCCGCGCCCGG
CTCGGTCGCCCAGGTACGTGAATGCGCGGCCCAACTCACGCGCTTTGCCAAGCAGAGCGGTTGTGCCCTGGTGATGGTCG
GCCATGTGACCAAGGACGGCACGCTCGCCGGCCCGCGCGTACTCGAACACATCGTCGACACCGTGCTGTATTTCGAAGGC
GACACGCAGTCGAGCTTCCGCCTGGTGCGCGCCTTCAAGAACCGCTTCGGCGCAGTGAACGAGCTGGGCGTCTTCGCGAT
GACCGACAAGGGGCTGCGCGGCGTCTCCAACCCGTCCGCGATCTTCCTTTCGCAACACGATCAGGATGTCGCCGGGGCCT
GCGTGCTGGTCACCCAGGAAGGCACGCGGCCGCTGCTGGTGGAGGTGCAGGCCCTGGTCGACCCGGCTCACGCGCCCAGT
CCGCGCCGCCTCTCGGTGGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCACCGACATGCAGGCCTGGT
CTGCGCGGACCAGGACGTCTTCGTGAACGCCGTGGGTGGCGTGCGGATCAATGAGCCGGCGGCCGACCTCGCAGTCTGTC
TCGCGATTGTCTCGTCGCTCCGCAACAAGCCCTTGCGCCGAGATATCGCGGTCTTCGGCGAGGTCGGCCTCGCGGGCGAG
ATCCGGCCCGCGCCGCGCGGACAGGAACGGCTCAAGGAGGCGGCCAAGCTGGGCTTTCGCTATGCCCTGGTGCCCAAGGC
CAATCTGCCGAAACAGGGCGTCGCAGGGATCGAGGTCATCGGTGTCGATCGCATCGATGAAGCGCTGAGCAAGGCGCGCG
AACTGGAAGCCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-452)

AAA domain (AAA_25)

(65-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.127

100

0.492
  radA Streptococcus mitis NCTC 12261

47.588

99.781

0.475
  radA Streptococcus pneumoniae Rx1

47.588

99.781

0.475
  radA Streptococcus pneumoniae D39

47.588

99.781

0.475
  radA Streptococcus pneumoniae R6

47.588

99.781

0.475
  radA Streptococcus pneumoniae TIGR4

47.588

99.781

0.475
  radA Streptococcus mitis SK321

47.577

99.344

0.473

Multiple sequence alignment