Detailed information NTG0976028

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: AADW57_RS04340
• Genome accession: NZ_CP151273
• Coordinates: 951127..952122 (+)
• Length: 331 a.a.
• NCBI ID: WP_341669656.1
• Uniprot ID: -
• Organism: Alcaligenes sp. SDU_A2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 946127..957122

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AADW57_RS04320 (AADW57_04320)	-	948608..949000 (+)	393	WP_341668825.1	hypothetical protein	-
AADW57_RS04325 (AADW57_04325)	-	949007..949261 (-)	255	WP_341668826.1	YfhL family 4Fe-4S dicluster ferredoxin	-
AADW57_RS04330 (AADW57_04330)	coaD	949336..949854 (-)	519	WP_341668827.1	pantetheine-phosphate adenylyltransferase	-
AADW57_RS04335 (AADW57_04335)	rsmD	949875..950504 (-)	630	WP_341668828.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
AADW57_RS04340 (AADW57_04340)	pilA	951127..952122 (+)	996	WP_341669656.1	signal recognition particle-docking protein FtsY	Machinery gene
AADW57_RS04345 (AADW57_04345)	-	952173..953714 (-)	1542	WP_341668829.1	CYTH and CHAD domain-containing protein	-
AADW57_RS04350 (AADW57_04350)	-	953921..954739 (-)	819	WP_341668830.1	IclR family transcriptional regulator	-
AADW57_RS04355 (AADW57_04355)	ribBA	954856..956025 (+)	1170	WP_341668831.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-
AADW57_RS04360 (AADW57_04360)	ribH	956040..956561 (+)	522	WP_341668832.1	6,7-dimethyl-8-ribityllumazine synthase	-
AADW57_RS04365 (AADW57_04365)	nusB	956545..957030 (+)	486	WP_341668833.1	transcription antitermination factor NusB	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 34693.02 Da
• Isoelectric Point: 8.0927

>NTDB_id=976028 AADW57_RS04340 WP_341669656.1 951127..952122(+) (pilA) [Alcaligenes sp. SDU_A2]
MHKQAQPQEQPQPVPVAAAPEPEPAPVKTSWLSRLKQGLSRTGQSIGGLFVGAKVDENLFEELEEALLLADAGVEATDKL
LTALRARIRKEKITDAAQVKQALCDILADHLKPLEKSFPLNAAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGAKVLLAA
GDTFRAAAREQLIEWGSRNNVSVIAQDGGDPAAVAFDAVHAGKARGMGVVMVDTAGRLPTQLNLMEELKKIKRVIAKADG
QAPHEVLLVVDGNTGQNAISQIRAFDAALGLTGLVVTKLDGTAKGGTLAAVAAGAQGVRPIPVYWIGVGEGMQDLQPFVA
REFAAAVIGLN

Nucleotide

• Length: 996 bp

>NTDB_id=976028 AADW57_RS04340 WP_341669656.1 951127..952122(+) (pilA) [Alcaligenes sp. SDU_A2]
TTGCATAAACAGGCGCAGCCACAAGAACAGCCGCAGCCTGTACCGGTTGCCGCCGCGCCGGAGCCTGAACCCGCCCCGGT
CAAGACGTCGTGGCTGTCACGCCTTAAACAGGGCTTGTCGCGCACCGGCCAGAGCATAGGCGGCTTGTTCGTCGGTGCCA
AGGTGGATGAAAACCTGTTCGAGGAGCTGGAGGAAGCCTTGCTGCTGGCCGATGCCGGGGTCGAGGCTACCGACAAGCTG
CTGACTGCCTTGCGCGCACGTATCCGCAAAGAAAAAATTACCGATGCCGCGCAGGTCAAGCAAGCGCTGTGCGATATTTT
GGCCGACCATTTGAAGCCGCTGGAAAAGTCCTTTCCCCTGAATGCCGCGCAGCCGCTGGTAGTCATGATCGCTGGGGTCA
ACGGCGCAGGCAAGACTACCTCTATCGGTAAGCTGGCACATACGTTTCAGCGGCAAGGTGCCAAGGTGCTGCTGGCAGCC
GGAGACACCTTCCGCGCGGCGGCCCGCGAACAACTGATTGAATGGGGCTCGCGCAATAATGTCAGCGTTATTGCGCAGGA
CGGTGGCGATCCGGCGGCGGTGGCCTTCGATGCGGTGCACGCCGGCAAGGCGCGCGGCATGGGCGTGGTCATGGTGGATA
CTGCCGGTCGCCTGCCGACTCAGTTGAACCTGATGGAAGAGCTCAAGAAGATCAAGCGTGTCATTGCCAAGGCCGATGGC
CAGGCTCCGCACGAAGTGTTGCTGGTGGTGGATGGCAATACAGGCCAAAATGCCATCTCGCAGATTCGCGCGTTTGATGC
CGCTCTGGGGCTGACCGGTCTGGTGGTTACCAAGCTGGATGGCACGGCCAAAGGCGGCACCCTGGCGGCCGTGGCCGCGG
GTGCGCAGGGCGTGCGTCCTATTCCTGTTTACTGGATAGGCGTGGGCGAAGGCATGCAGGATTTGCAGCCCTTTGTCGCG
CGTGAGTTTGCCGCCGCCGTTATTGGTCTGAACTAG

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (126-327)

• SRP54-type protein, helical bundle domain (SRP54_N) (44-107)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	57.843	92.447	0.535