Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAC808_RS05890 Genome accession   NZ_CP151211
Coordinates   1204473..1205039 (-) Length   188 a.a.
NCBI ID   WP_002364599.1    Uniprot ID   A0A1B4XKB5
Organism   Enterococcus faecalis strain DJH702_8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1199473..1210039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC808_RS05870 (AAC808_05875) dnaB 1199928..1201295 (-) 1368 WP_002381331.1 replicative DNA helicase -
  AAC808_RS05875 (AAC808_05880) rplI 1201568..1202020 (-) 453 WP_002356023.1 50S ribosomal protein L9 -
  AAC808_RS05880 (AAC808_05885) - 1202026..1204002 (-) 1977 WP_002388668.1 DHH family phosphoesterase -
  AAC808_RS05885 (AAC808_05890) rpsR 1204208..1204447 (-) 240 WP_002356021.1 30S ribosomal protein S18 -
  AAC808_RS05890 (AAC808_05895) ssb 1204473..1205039 (-) 567 WP_002364599.1 single-stranded DNA-binding protein Machinery gene
  AAC808_RS05895 (AAC808_05900) rpsF 1205084..1205386 (-) 303 WP_002356019.1 30S ribosomal protein S6 -
  AAC808_RS05900 (AAC808_05905) gyrA 1205561..1208062 (-) 2502 WP_002361457.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20574.18 Da        Isoelectric Point: 4.6010

>NTDB_id=975876 AAC808_RS05890 WP_002364599.1 1204473..1205039(-) (ssb) [Enterococcus faecalis strain DJH702_8]
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFNNNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNN
GMPDFDKDSDPFGGSGSSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=975876 AAC808_RS05890 WP_002364599.1 1204473..1205039(-) (ssb) [Enterococcus faecalis strain DJH702_8]
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCTAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACAATGCCGGTTCTGGATTTAATAACAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAAC
GGTATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B4XKB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.638

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.85

100

0.543

Multiple sequence alignment