Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AADQ96_RS15845 Genome accession   NZ_CP151202
Coordinates   3199448..3200062 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain CFTMDU     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3194448..3205062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADQ96_RS15830 (AADQ96_15830) helD 3194672..3196726 (-) 2055 WP_057063926.1 DNA helicase IV -
  AADQ96_RS15835 (AADQ96_15835) - 3196852..3197298 (+) 447 WP_003035892.1 YccF domain-containing protein -
  AADQ96_RS15840 (AADQ96_15840) yccS 3197317..3199470 (+) 2154 WP_032941200.1 YccS family putative transporter -
  AADQ96_RS15845 (AADQ96_15845) sxy/tfoX 3199448..3200062 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  AADQ96_RS15850 (AADQ96_15850) sulA 3200280..3200789 (+) 510 WP_057063928.1 SOS-induced cell division inhibitor SulA -
  AADQ96_RS15855 (AADQ96_15855) ompA 3201147..3202205 (+) 1059 WP_003836839.1 porin OmpA -
  AADQ96_RS15860 (AADQ96_15860) matP 3202295..3202747 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  AADQ96_RS15865 (AADQ96_15865) - 3202933..3204693 (+) 1761 WP_003035878.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=975816 AADQ96_RS15845 WP_003035889.1 3199448..3200062(-) (sxy/tfoX) [Citrobacter freundii strain CFTMDU]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=975816 AADQ96_RS15845 WP_003035889.1 3199448..3200062(-) (sxy/tfoX) [Citrobacter freundii strain CFTMDU]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCAGCGACGCG
TCGCCAGGAGTTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686

Multiple sequence alignment