Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   AADP84_RS09980 Genome accession   NZ_CP151186
Coordinates   2033355..2034398 (-) Length   347 a.a.
NCBI ID   WP_001017131.1    Uniprot ID   A0A0D1IMN4
Organism   Staphylococcus argenteus strain Dubai-25     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2028355..2039398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADP84_RS09950 (AADP84_09950) - 2028766..2030013 (-) 1248 WP_000656301.1 aminopeptidase -
  AADP84_RS09955 (AADP84_09955) - 2030025..2030225 (-) 201 WP_000180459.1 DUF1128 family protein -
  AADP84_RS09960 (AADP84_09960) - 2030372..2030836 (+) 465 WP_000228669.1 low molecular weight protein-tyrosine-phosphatase -
  AADP84_RS09965 (AADP84_09965) - 2030843..2031118 (+) 276 WP_000428174.1 YtxH domain-containing protein -
  AADP84_RS09970 (AADP84_09970) - 2031397..2032620 (+) 1224 WP_000037065.1 YihY/virulence factor BrkB family protein -
  AADP84_RS09975 (AADP84_09975) vraR 2032736..2033365 (-) 630 WP_000153529.1 two-component system response regulator VraR Regulator
  AADP84_RS09980 (AADP84_09980) vraS 2033355..2034398 (-) 1044 WP_001017131.1 sensor histidine kinase Regulator
  AADP84_RS09985 (AADP84_09985) liaF 2034395..2035096 (-) 702 WP_031788217.1 cell wall-active antibiotics response protein LiaF -
  AADP84_RS09990 (AADP84_09990) - 2035111..2035497 (-) 387 WP_001110170.1 hypothetical protein -
  AADP84_RS09995 (AADP84_09995) map 2035718..2036476 (-) 759 WP_031788218.1 type I methionyl aminopeptidase -
  AADP84_RS10000 (AADP84_10000) - 2037007..2037993 (+) 987 WP_031788370.1 aromatic acid exporter family protein -
  AADP84_RS10005 (AADP84_10005) - 2038625..2039347 (-) 723 WP_031787877.1 type 1 glutamine amidotransferase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 40044.52 Da        Isoelectric Point: 6.0577

>NTDB_id=975772 AADP84_RS09980 WP_001017131.1 2033355..2034398(-) (vraS) [Staphylococcus argenteus strain Dubai-25]
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKT
QIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEI
QDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNKEDSYDD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=975772 AADP84_RS09980 WP_001017131.1 2033355..2034398(-) (vraS) [Staphylococcus argenteus strain Dubai-25]
ATGAACCATTATATTAGAACAATTGGTTCGATGCTCATCTTAGTATACAGCATGCTAGCGGCATTTCTTTTTATAGATAA
AGTTTTCGTTAATATTATTTATTTTCAAGGCATGTTTTATACACAAATATTTGGGATTCCAGTCTTTTTATTTTTAAATC
TCATTATCATTTTATTGTGTATCATCGTCGGATCGGTGCTTGCCTACAAAATTAATCAACAAAATGATTGGATTAAGACA
CAAATTGAGCGTTCTATGGAAGGCGAAACAGTAGGTATCAATGATCAAAATATAGAAATATATAGTGAAACATTAGATTT
ATATCATACGTTAGTACCTTTAAATCAAGAATTGCATAAGTTAAGACTCAAAACGCAAAATTTAACAAATGAAAATTACA
ATATTAATGATGTTAAAGTTAAAAAGATTATCGAAGATGAAAGACAACGTTTAGCTAGAGAACTACACGACTCTGTTAGT
CAACAACTTTTTGCGGCAAGTATGATGTTATCTGCAATTAAAGAAACGAAATTAGAACCACCTTTAGATCAACAAATACC
TATTTTAGAGAAAATGGTTCAAGATTCTCAGTTAGAAATGCGTGCTTTGCTGCTACACTTAAGACCACTCGGCTTGAAAG
ATAAGTCATTAGGCGAAGGTATTAAAGATTTAGTTATTGATTTACAAAAGAAAGTGCCAATGAAAGTTGTGCATGAAATA
CAAGATTTTAAAGTGCCAAAAGGTATTGAAGATCATTTATTTAGAATTACGCAAGAAGCAATATCTAATACATTGAGACA
TTCAAATGGTACGAAAGTAACTGTAGAATTATTTAATAAAGATGATTATTTATTGTTAAGGATACAAGATAATGGTAAAG
GTTTTAATGTAGATGAAAAATTAGAACAAAGTTATGGACTTAAAAATATGCGTGAAAGAGCTTTGGAAATTGGTGCAACG
TTCCATATTGTATCACTACCAGATTCAGGTACACGTATTGAGGTGAAAGCACCTCTAAATAAGGAGGATTCGTATGACGA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0D1IMN4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

100

100

1


Multiple sequence alignment