Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ABTY86_RS04010 Genome accession   NZ_CP180609
Coordinates   834034..835254 (+) Length   406 a.a.
NCBI ID   WP_001735713.1    Uniprot ID   -
Organism   Escherichia coli strain PS1Phumofeces1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 829034..840254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABTY86_RS03995 (ABTY86_003995) rfbA 829177..830055 (+) 879 WP_042344996.1 glucose-1-phosphate thymidylyltransferase RfbA -
  ABTY86_RS04000 (ABTY86_004000) rfbC 830122..830673 (+) 552 WP_021526989.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  ABTY86_RS04005 (ABTY86_004005) - 830723..832870 (+) 2148 WP_032317955.1 capsular polysaccharide biosynthesis protein -
  ABTY86_RS04010 (ABTY86_004010) kpsS 834034..835254 (+) 1221 WP_001735713.1 capsule biosynthesis protein Regulator
  ABTY86_RS04015 (ABTY86_004015) - 835280..835510 (-) 231 Protein_789 hypothetical protein -
  ABTY86_RS04020 (ABTY86_004020) - 835616..835792 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  ABTY86_RS04025 (ABTY86_004025) - 835809..836245 (-) 437 Protein_791 DUF5983 family protein -
  ABTY86_RS04030 (ABTY86_004030) - 836242..836616 (-) 375 WP_042345000.1 TA system toxin CbtA family protein -
  ABTY86_RS04035 (ABTY86_004035) - 836706..837074 (-) 369 WP_042344232.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ABTY86_RS04040 (ABTY86_004040) - 837237..837458 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  ABTY86_RS04045 (ABTY86_004045) radC 837527..838003 (-) 477 WP_001186725.1 RadC family protein Machinery gene
  ABTY86_RS04050 (ABTY86_004050) - 838019..838504 (-) 486 WP_001735709.1 antirestriction protein -
  ABTY86_RS04055 (ABTY86_004055) - 838559..839377 (-) 819 WP_074481115.1 DUF932 domain-containing protein -
  ABTY86_RS04060 (ABTY86_004060) - 839495..839690 (-) 196 Protein_798 DUF905 family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48421.92 Da        Isoelectric Point: 10.1710

>NTDB_id=975725 ABTY86_RS04010 WP_001735713.1 834034..835254(+) (kpsS) [Escherichia coli strain PS1Phumofeces1]
MKNNALSILLSGKKYLLLQGPMGPFFNDIAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSAM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=975725 ABTY86_RS04010 WP_001735713.1 834034..835254(+) (kpsS) [Escherichia coli strain PS1Phumofeces1]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTCTTCAA
TGATATTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGGGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGGCGATG
AAACGTATTGGTCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ACGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCACCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382