Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ABTY65_RS18650 Genome accession   NZ_CP180604
Coordinates   3870454..3871836 (-) Length   460 a.a.
NCBI ID   WP_001412353.1    Uniprot ID   -
Organism   Escherichia coli strain PS2Canimalfeces3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3865454..3876836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABTY65_RS18635 (ABTY65_018635) ettA 3867227..3868894 (+) 1668 WP_000046749.1 energy-dependent translational throttle protein EttA -
  ABTY65_RS18640 (ABTY65_018640) - 3869055..3869150 (-) 96 Protein_3643 hypothetical protein -
  ABTY65_RS18645 (ABTY65_018645) nadR 3869201..3870433 (-) 1233 WP_000093810.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  ABTY65_RS18650 (ABTY65_018650) radA/sms 3870454..3871836 (-) 1383 WP_001412353.1 DNA repair protein RadA Machinery gene
  ABTY65_RS18655 (ABTY65_018655) serB 3871885..3872853 (-) 969 WP_001132955.1 phosphoserine phosphatase -
  ABTY65_RS18660 (ABTY65_018660) ytjB 3872959..3873603 (+) 645 WP_000124615.1 YtjB family periplasmic protein -
  ABTY65_RS18665 (ABTY65_018665) lplA 3873631..3874647 (+) 1017 WP_000105889.1 lipoate--protein ligase LplA -
  ABTY65_RS18670 (ABTY65_018670) - 3874679..3874942 (+) 264 Protein_3649 helix-turn-helix domain-containing protein -
  ABTY65_RS18675 (ABTY65_018675) deoD 3875103..3875822 (-) 720 WP_000224877.1 purine-nucleoside phosphorylase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49472.10 Da        Isoelectric Point: 7.1936

>NTDB_id=975610 ABTY65_RS18650 WP_001412353.1 3870454..3871836(-) (radA/sms) [Escherichia coli strain PS2Canimalfeces3]
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPTVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE
QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKMRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDH
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV
GLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=975610 ABTY65_RS18650 WP_001412353.1 3870454..3871836(-) (radA/sms) [Escherichia coli strain PS2Canimalfeces3]
GTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGTGC
CTGTCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCTGCGTCGCCAACGGTGGCGCGTAACGAGCGTCTCAGCGGCT
ATGCCGGTAGCGCCGGGGTGGCAAAAGTCCAGAAACTCTCCGATATCAGCCTTGAAGAGCTGCCGCGTTTTTCCACCGGA
TTTAAAGAGTTCGACCGCGTACTAGGCGGCGGGGTGGTGCCGGGAAGCGCCATTCTGATTGGCGGTAACCCAGGTGCCGG
GAAATCCACATTGCTATTGCAAACGCTGTGCAAACTGGCGCAGCAGATGAAAACGCTGTATGTCACTGGCGAAGAGTCGC
TGCAACAGGTGGCAATGCGCGCTCATCGCCTTGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAA
CAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTAATTGACTCGATCCAGGTGATGCATATGGCGGATGT
ACAATCATCGCCAGGCAGCGTGGCGCAGGTGCGTGAAACAGCTGCTTATCTGACGCGCTTCGCCAAAATGCGCGGTGTGG
CGATTGTCATGGTTGGACACGTAACCAAAGATGGCTCGCTGGCGGGCCCTAAAGTGCTGGAACACTGTATCGACTGTTCG
GTGCTTTTGGATGGCGATGCCGACTCCCGTTTTCGCACCTTACGCAGCCATAAAAACCGCTTCGGCGCGGTGAATGAGCT
GGGCGTCTTCGCGATGACCGAACAGGGGCTGCGTGAAGTCAGCAACCCTTCGGCAATTTTCTTAAGTCGCGGCGATGAAG
TGACCTCCGGTAGCTCAGTGATGGTGGTATGGGAAGGAACGCGTCCACTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCGATGATGGCGAACCCACGCCGCGTGGCAGTGGGGCTGGAACAAAACCGTCTGGCAATCCTGCTGGCTGTGTTGCACCG
CCACGGTGGTCTGCAAATGGCCGATCAGGATGTGTTTGTGAACGTGGTCGGCGGCGTGAAGGTAACCGAAACCAGTGCCG
ACTTAGCGTTACTGCTGGCGATGGTTTCCAGCCTGCGTGACAGACCGCTGCCACAGGATCTGGTGGTGTTTGGTGAAGTC
GGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGTCAGGAACGAATTTCAGAAGCGGCGAAACACGGTTTTCGCCGGGC
GATTGTTCCGGCGGCTAACGTACCGAAAAAAGCGCCGGAAGGGATGCAGATTTTTGGCGTTAAAAAACTCTCCGACGCGC
TTAGCGTGTTCGACGACTTATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.608

99.348

0.463
  radA Streptococcus mitis NCTC 12261

43.64

99.13

0.433
  radA Streptococcus pneumoniae Rx1

43.202

99.13

0.428
  radA Streptococcus pneumoniae D39

43.202

99.13

0.428
  radA Streptococcus pneumoniae R6

43.202

99.13

0.428
  radA Streptococcus pneumoniae TIGR4

43.202

99.13

0.428
  radA Streptococcus mitis SK321

43.202

99.13

0.428

Multiple sequence alignment