Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   AAC899_RS13725 Genome accession   NZ_CP151168
Coordinates   2901887..2902645 (-) Length   252 a.a.
NCBI ID   WP_025095393.1    Uniprot ID   A0AB38Z0B0
Organism   Acinetobacter soli strain HY24     
Function   assists with secretin assembly and localization (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2896887..2907645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC899_RS13705 (AAC899_13705) - 2897951..2898652 (-) 702 WP_004932928.1 tetratricopeptide repeat protein -
  AAC899_RS13710 (AAC899_13710) hisS 2898684..2899976 (-) 1293 WP_119690167.1 histidine--tRNA ligase -
  AAC899_RS13715 (AAC899_13715) ispG 2899973..2901088 (-) 1116 WP_004932923.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  AAC899_RS13720 (AAC899_13720) - 2901114..2901896 (-) 783 WP_004943670.1 DUF4115 domain-containing protein -
  AAC899_RS13725 (AAC899_13725) pilF 2901887..2902645 (-) 759 WP_025095393.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  AAC899_RS13730 (AAC899_13730) rlmN 2902705..2903949 (-) 1245 WP_218261937.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  AAC899_RS13735 (AAC899_13735) ndk 2904071..2904502 (-) 432 WP_004932912.1 nucleoside-diphosphate kinase -
  AAC899_RS13740 (AAC899_13740) iscX 2904611..2904811 (-) 201 WP_004932909.1 Fe-S cluster assembly protein IscX -
  AAC899_RS13745 (AAC899_13745) - 2904883..2905434 (-) 552 WP_218261936.1 phosphatase PAP2 family protein -
  AAC899_RS13750 (AAC899_13750) - 2905460..2906743 (-) 1284 WP_288432848.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28565.55 Da        Isoelectric Point: 9.4949

>NTDB_id=975586 AAC899_RS13725 WP_025095393.1 2901887..2902645(-) (pilF) [Acinetobacter soli strain HY24]
MLAALLLSGCQTTSIKKDPQKGAKVRTQLAAEYIKTGDLDAAKRALDHALKVEPKDSNANMMMGVLLQQEGSRPNLEKAD
EYFARAVALDPENAQARNNYGAYLYQMKRYHDAIQQLTRAGSTLGYDQRYLALENLGRIYLHLGGVSNAEKMFKQALQAN
RDSTVSMLELAEIYYLQHKIPASTEMYEQYVRTVGQKNQSARALWVGIRVARANADRTGVQVLVNQLRIFYPDSPEYQRY
MQLQYSTEAVWK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=975586 AAC899_RS13725 WP_025095393.1 2901887..2902645(-) (pilF) [Acinetobacter soli strain HY24]
ATGCTGGCGGCGCTTCTTTTATCTGGATGCCAAACGACTTCAATAAAAAAAGATCCGCAAAAAGGCGCGAAAGTCCGGAC
TCAACTTGCAGCCGAATATATCAAAACAGGTGATCTTGATGCTGCCAAGCGTGCGCTAGATCATGCACTCAAAGTCGAAC
CGAAAGACAGCAATGCCAACATGATGATGGGGGTGTTGCTACAGCAAGAGGGCAGTCGCCCAAATCTTGAAAAAGCCGAT
GAATATTTTGCACGTGCTGTAGCGCTGGATCCAGAGAATGCTCAGGCCAGAAACAACTATGGCGCTTATTTGTATCAGAT
GAAACGTTATCATGATGCAATTCAACAATTGACACGCGCCGGTAGTACATTAGGATATGACCAGCGCTATCTGGCATTGG
AAAATTTAGGTCGGATTTATTTGCATCTGGGGGGTGTTTCGAATGCTGAAAAAATGTTCAAACAGGCACTTCAGGCAAAC
CGTGATTCAACTGTTTCAATGTTAGAGTTAGCAGAAATTTATTATTTGCAACACAAAATTCCTGCCTCGACAGAGATGTA
TGAACAATATGTTCGAACTGTTGGGCAGAAAAATCAGAGTGCTCGTGCACTTTGGGTGGGAATTCGCGTCGCGAGAGCGA
ATGCCGACCGGACTGGGGTGCAAGTATTGGTAAATCAGCTTCGTATTTTTTACCCAGATAGTCCAGAATATCAACGTTAT
ATGCAATTACAGTACAGTACTGAGGCCGTATGGAAATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_10)

(132-161)

Tetratricopeptide repeat (TPR_8)

(23-56)

Tetratricopeptide repeat (TPR_16)

(76-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baylyi ADP1

85.317

100

0.853
  pilF Acinetobacter baumannii D1279779

74.8

99.206

0.742

Multiple sequence alignment