Detailed information NTG0975530

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABTZ31_RS18090
• Genome accession: NZ_CP180600
• Coordinates: 3665502..3666494 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain PS2Canimalfeces12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3660502..3671494

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABTZ31_RS18060 (ABTZ31_018060)	ispD	3660563..3661273 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABTZ31_RS18065 (ABTZ31_018065)	ispF	3661273..3661752 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABTZ31_RS18070 (ABTZ31_018070)	truD	3661749..3662798 (+)	1050	WP_219380822.1	tRNA pseudouridine(13) synthase TruD	-
ABTZ31_RS18075 (ABTZ31_018075)	surE	3662779..3663540 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABTZ31_RS18080 (ABTZ31_018080)	pcm	3663534..3664160 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABTZ31_RS18085 (ABTZ31_018085)	nlpD	3664345..3665439 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ABTZ31_RS18090 (ABTZ31_018090)	rpoS	3665502..3666494 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABTZ31_RS18095 (ABTZ31_018095)	ygbN	3666588..3667952 (-)	1365	WP_000104429.1	GntP family transporter	-
ABTZ31_RS18100 (ABTZ31_018100)	ygbM	3668041..3668817 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ABTZ31_RS18105 (ABTZ31_018105)	ygbL	3668822..3669460 (-)	639	WP_001278994.1	aldolase	-
ABTZ31_RS18110 (ABTZ31_018110)	otnK	3669457..3670719 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=975530 ABTZ31_RS18090 WP_000081550.1 3665502..3666494(+) (rpoS) [Escherichia coli strain PS2Canimalfeces12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=975530 ABTZ31_RS18090 WP_000081550.1 3665502..3666494(+) (rpoS) [Escherichia coli strain PS2Canimalfeces12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715