Detailed information NTG0975477

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AADH43_RS02915
• Genome accession: NZ_CP151155
• Coordinates: 598324..599313 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain vp-pir-201806
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 593324..604313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AADH43_RS02880 (AADH43_02880)	ftsB	593332..593613 (+)	282	WP_005455577.1	cell division protein FtsB	-
AADH43_RS02885 (AADH43_02885)	ispD	593615..594319 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AADH43_RS02890 (AADH43_02890)	ispF	594337..594813 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AADH43_RS02895 (AADH43_02895)	truD	594860..595903 (+)	1044	WP_021450029.1	tRNA pseudouridine(13) synthase TruD	-
AADH43_RS02900 (AADH43_02900)	surE	595903..596679 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
AADH43_RS02905 (AADH43_02905)	-	596679..597305 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AADH43_RS02910 (AADH43_02910)	-	597320..598243 (+)	924	WP_021486791.1	peptidoglycan DD-metalloendopeptidase family protein	-
AADH43_RS02915 (AADH43_02915)	rpoS	598324..599313 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
AADH43_RS02920 (AADH43_02920)	mutS	599393..601954 (-)	2562	WP_085577166.1	DNA mismatch repair protein MutS	-
AADH43_RS02925 (AADH43_02925)	pncC	602039..602521 (+)	483	WP_005455551.1	nicotinamide-nucleotide amidase	-
AADH43_RS02930 (AADH43_02930)	recA	602722..603765 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=975477 AADH43_RS02915 WP_005478537.1 598324..599313(+) (rpoS) [Vibrio parahaemolyticus strain vp-pir-201806]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=975477 AADH43_RS02915 WP_005478537.1 598324..599313(+) (rpoS) [Vibrio parahaemolyticus strain vp-pir-201806]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCTGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851