Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   UXR25_RS08410 Genome accession   NZ_CP151146
Coordinates   1698936..1699382 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN152     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1693936..1704382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXR25_RS08380 (UXR25_08380) gcvPA 1694862..1696208 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  UXR25_RS08385 (UXR25_08385) gcvT 1696228..1697319 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  UXR25_RS08390 (UXR25_08390) - 1697478..1698002 (-) 525 WP_001015120.1 shikimate kinase -
  UXR25_RS08395 (UXR25_08395) - 1697992..1698138 (-) 147 WP_001792109.1 hypothetical protein -
  UXR25_RS08400 (UXR25_08400) comGF 1698235..1698732 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  UXR25_RS08405 (UXR25_08405) comGE 1698650..1698949 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  UXR25_RS08410 (UXR25_08410) comGD 1698936..1699382 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  UXR25_RS08415 (UXR25_08415) comGC 1699360..1699671 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  UXR25_RS08420 (UXR25_08420) comGB 1699685..1700755 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  UXR25_RS08425 (UXR25_08425) comGA 1700727..1701701 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  UXR25_RS08430 (UXR25_08430) - 1701753..1702376 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  UXR25_RS08435 (UXR25_08435) - 1702373..1702702 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  UXR25_RS08440 (UXR25_08440) - 1702702..1703688 (-) 987 WP_000161311.1 ROK family glucokinase -
  UXR25_RS08445 (UXR25_08445) - 1703685..1703888 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=975396 UXR25_RS08410 WP_001788899.1 1698936..1699382(-) (comGD) [Staphylococcus aureus strain BSN152]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=975396 UXR25_RS08410 WP_001788899.1 1698936..1699382(-) (comGD) [Staphylococcus aureus strain BSN152]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment